RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 CTNND2Q9UQB3 1225 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 TNFSF13BQ9Y275 285 aa15.21■□□□□ 0.03
C9orf3-221ENST00000489562 MICAL3Q7RTP6 2002 aa15.21■□□□□ 0.02
C9orf3-221ENST00000489562 UMODL1Q5DID0 1318 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 A0A1B0GUA9 196 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 TRIM43BA6NCK2 446 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 TGFB1I1O43294 461 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 EVI5O60447 810 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 CSDE1O75534 798 aaKnown RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 CXCL10P02778 98 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 GARTP22102 1010 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 RPL13P26373 211 aaKnown RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 NFX1Q12986 1120 aaKnown RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 MBTPS1Q14703 1052 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 ZCWPW2Q504Y3 356 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 MPZL3Q6UWV2 235 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 C11orf57Q6ZUT1 292 aaPredicted RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 TMEM199Q8N511 208 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 TRIM43Q96BQ3 446 aaPredicted RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 FTHL17Q9BXU8 183 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 IFIH1Q9BYX4 1025 aaKnown RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 SEMA6BQ9H3T3 888 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 AGO3Q9H9G7 860 aaKnown RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 AGPAT3Q9NRZ7 376 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 PADI3Q9ULW8 664 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 PIN4Q9Y237 131 aaKnown RBP15.2■□□□□ 0.02
C9orf3-221ENST00000489562 STYXL1Q9Y6J8 313 aa15.2■□□□□ 0.02
C9orf3-221ENST00000489562 CLDN3O15551 220 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 B4GALT5O43286 388 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 NBNO60934 754 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 FGFR1OPO95684 399 aaKnown RBP15.19■□□□□ 0.02
C9orf3-221ENST00000489562 EDN1P05305 212 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 PFKMP08237 780 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 FGFR4P22455 802 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 PROZP22891 400 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 CD52P31358 61 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 ZNF165P49910 485 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 CCL23P55773 120 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 DCAF4L1Q3SXM0 396 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 PLEKHG4Q58EX7 1191 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 MFSD5Q6N075 450 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 ARMCX5Q6P1M9 558 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 SLC27A1Q6PCB7 646 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 SLC9A9Q8IVB4 645 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 C7orf61Q8IZ16 206 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 ENOX1Q8TC92 643 aaKnown RBP15.19■□□□□ 0.02
C9orf3-221ENST00000489562 SEPT8Q92599 483 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 PCDH10Q9P2E7 1040 aa15.19■□□□□ 0.02
C9orf3-221ENST00000489562 A0A0B4J269 797 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 MCF2P10911 925 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 ZSCAN20P17040 1043 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-221ENST00000489562 HOXA11P31270 313 aaPredicted RBP15.18■□□□□ 0.02
C9orf3-221ENST00000489562 MATR3P43243 847 aaKnown RBP eCLIP15.18■□□□□ 0.02
C9orf3-221ENST00000489562 FKBP3Q00688 224 aaKnown RBP15.18■□□□□ 0.02
C9orf3-221ENST00000489562 MCL1Q07820 350 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 NOLC1Q14978 699 aaKnown RBP eCLIP15.18■□□□□ 0.02
C9orf3-221ENST00000489562 KYAT1Q16773 422 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 ZNF568Q3ZCX4 644 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 ANKRD40Q6AI12 368 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 TTI2Q6NXR4 508 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 SLC39A4Q6P5W5 647 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 RPUSD2Q8IZ73 545 aaKnown RBP15.18■□□□□ 0.02
C9orf3-221ENST00000489562 POMGNT1Q8WZA1 660 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 DPF3Q92784 378 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 SCLYQ96I15 445 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 CPB2Q96IY4 423 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 TCHPQ9BT92 498 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 TRAIPQ9BWF2 469 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 PDZD7Q9H5P4 517 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 PTPRHQ9HD43 1115 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 ANKFY1Q9P2R3 1169 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 RALGAPA2Q2PPJ7 1873 aa15.18■□□□□ 0.02
C9orf3-221ENST00000489562 TTLL13PA6NNM8 815 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 SMTNL1A8MU46 457 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 ANKRD63C9JTQ0 380 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 IKBKBO14920 756 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 CETN3O15182 167 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 LDHAP00338 332 aaKnown RBP15.17■□□□□ 0.02
C9orf3-221ENST00000489562 NR3C1P04150 777 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 SKIP12755 728 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 RAB27AP51159 221 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 STX17P56962 302 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 MYL5Q02045 173 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 PPIGQ13427 754 aaKnown RBP eCLIP15.17■□□□□ 0.025e-8■□□□□ 9.9
C9orf3-221ENST00000489562 GPNMBQ14956 572 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 TPD52L1Q16890 204 aaPredicted RBP15.17■□□□□ 0.02
C9orf3-221ENST00000489562 SPATA1Q5VX52 437 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 TWF2Q6IBS0 349 aaKnown RBP15.17■□□□□ 0.02
C9orf3-221ENST00000489562 ZC3H3Q8IXZ2 948 aaKnown RBP15.17■□□□□ 0.02
C9orf3-221ENST00000489562 CSGALNACT2Q8N6G5 542 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 FAM200AQ8TCP9 573 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 NOC3LQ8WTT2 800 aaKnown RBP15.17■□□□□ 0.02
C9orf3-221ENST00000489562 CEP63Q96MT8 703 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 MSTO1Q9BUK6 570 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 KIAA1586Q9HCI6 787 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 DMAC2Q9NW81 257 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 NR2E3Q9Y5X4 410 aa15.17■□□□□ 0.02
C9orf3-221ENST00000489562 TRIP11Q15643 1979 aa15.16■□□□□ 0.02
C9orf3-221ENST00000489562 ANK1P16157 1881 aa15.16■□□□□ 0.02
C9orf3-221ENST00000489562 TTC3P53804 2025 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms