RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SRGAP2CP0DJJ0 459 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 PTPN11Q06124 597 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-220ENST00000489318 MCL1Q07820 350 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 KCNH2Q12809 1159 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 SYCP1Q15431 976 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 KCNA10Q16322 511 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 SNRNP35Q16560 246 aaKnown RBP12.53□□□□□ -0.4
C9orf3-220ENST00000489318 PTPN21Q16825 1174 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 RUFY4Q6ZNE9 571 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 RPAINQ86UA6 219 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 CREBRFQ8IUR6 639 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 NME8Q8N427 588 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 POMGNT1Q8WZA1 660 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 MFSD14AQ96MC6 490 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 FDXACB1Q9BRP7 624 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-220ENST00000489318 TARS2Q9BW92 718 aaKnown RBP12.53□□□□□ -0.4
C9orf3-220ENST00000489318 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.53□□□□□ -0.4
C9orf3-220ENST00000489318 KCNF1Q9H3M0 494 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 PCIF1Q9H4Z3 704 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 PAK6Q9NQU5 681 aaPredicted RBP12.53□□□□□ -0.4
C9orf3-220ENST00000489318 TNFSF13BQ9Y275 285 aa12.53□□□□□ -0.4
C9orf3-220ENST00000489318 A0A1W2PQJ5 194 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 TTLL13PA6NNM8 815 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 P4HA2O15460 535 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 MFAP3LO75121 409 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 LDHAP00338 332 aaKnown RBP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 IQCF3P0C7M6 154 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 KRT13P13646 458 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 FECHP22830 423 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 SFPQP23246 707 aaKnown RBP eCLIP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 ACLYP53396 1101 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 NLRP11P59045 1033 aaKnown RBP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 CLDN10P78369 228 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 KCNMA1Q12791 1236 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 NBPF20Q3BBV1 942 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 CBWD2Q8IUF1 395 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 LRRC8AQ8IWT6 810 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 TC2NQ8N9U0 490 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 ZSWIM2Q8NEG5 633 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 PLEKHO2Q8TD55 490 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 TMC2Q8TDI7 906 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 CACTINQ8WUQ7 758 aaKnown RBP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 NUP58Q9BVL2 599 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 AGO2Q9UKV8 859 aaKnown RBP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 GRIN2DO15399 1336 aa12.52□□□□□ -0.41
C9orf3-220ENST00000489318 PDCD11Q14690 1871 aaKnown RBP12.52□□□□□ -0.41
C9orf3-220ENST00000489318 INO80B-WBP1J3KQ70 363 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 TSPAN1O60635 241 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 FMO5P49326 533 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 VAMP7P51809 220 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 CCZ1BP86790 482 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 CCZ1P86791 482 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 POU5F1Q01860 360 aaKnown RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 CYP24A1Q07973 514 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 PRPF4BQ13523 1007 aaKnown RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 NOLC1Q14978 699 aaKnown RBP eCLIP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 DCAF17Q5H9S7 520 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 C1orf220Q5T0J3 134 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 ATF7IP2Q5U623 682 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 GDF6Q6KF10 455 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 DPY19L2P1Q6NXN4 242 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 MPZL3Q6UWV2 235 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 CRELD2Q6UXH1 353 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 SERINC5Q86VE9 423 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 CNGA4Q8IV77 575 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 SLC43A3Q8NBI5 491 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 PARD3BQ8TEW8 1205 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 NLRP7Q8WX94 980 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 SAAL1Q96ER3 474 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 CCDC51Q96ER9 411 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 EDEM3Q9BZQ6 932 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 INO80BQ9C086 356 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 FAM49AQ9H0Q0 323 aaPredicted RBP12.51□□□□□ -0.41
C9orf3-220ENST00000489318 TMX1Q9H3N1 280 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 PLCB1Q9NQ66 1216 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 FBXL5Q9UKA1 691 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 PHF24Q9UPV7 400 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 ZKSCAN5Q9Y2L8 839 aa12.51□□□□□ -0.41
C9orf3-220ENST00000489318 PES1O00541 588 aaKnown RBP12.5□□□□□ -0.41
C9orf3-220ENST00000489318 OGTO15294 1046 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 CLDN3O15551 220 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 B4GALT5O43286 388 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 N4BP1O75113 896 aaKnown RBP12.5□□□□□ -0.41
C9orf3-220ENST00000489318 TRIM49P0CI25 452 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 TRIM49CP0CI26 452 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 DARSP14868 501 aaKnown RBP12.5□□□□□ -0.41
C9orf3-220ENST00000489318 CASP14P31944 242 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 GTF2H1P32780 548 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 FXR1P51114 621 aaKnown RBP eCLIP12.5□□□□□ -0.41
C9orf3-220ENST00000489318 ZNF200P98182 395 aaPredicted RBP12.5□□□□□ -0.41
C9orf3-220ENST00000489318 RBL2Q08999 1139 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 PSMD6Q15008 389 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 TCERG1LQ5VWI1 586 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 USP37Q86T82 979 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 TMEM139Q8IV31 216 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 BRSK2Q8IWQ3 736 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 CCDC155Q8N6L0 562 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 CCDC112Q8NEF3 446 aa12.5□□□□□ -0.41
C9orf3-220ENST00000489318 SH3TC2Q8TF17 1288 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms