RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 C16orf59Q7L2K0 433 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 SFR1Q86XK3 245 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 TDHQ8IZJ6 230 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 TOP1MTQ969P6 601 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 FIZ1Q96SL8 496 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 PPP1R16BQ96T49 567 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 ACO2Q99798 780 aaKnown RBP9.06□□□□□ -0.96
USP54-212ENST00000480210 ADAM2Q99965 735 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 BLZF1Q9H2G9 400 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 MINDY3Q9H8M7 445 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 TBX20Q9UMR3 447 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 PIN4Q9Y237 131 aaKnown RBP9.06□□□□□ -0.96
USP54-212ENST00000480210 TNFSF13BQ9Y275 285 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 PCDHB7Q9Y5E2 793 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 SLC4A7Q9Y6M7 1214 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 ZMYM2Q9UBW7 1377 aa9.06□□□□□ -0.96
USP54-212ENST00000480210 FNDC1Q4ZHG4 1894 aaPredicted RBP9.06□□□□□ -0.96
USP54-212ENST00000480210 MKI67P46013 3256 aaKnown RBP9.06□□□□□ -0.96
USP54-212ENST00000480210 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 ZBBXA8MT70 800 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 C9IYK1 514 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 TOM1L1O75674 476 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 PPP1R37O75864 691 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 LETM1O95202 739 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 GCNT3O95395 438 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 ARF4P18085 180 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 NMT1P30419 496 aaKnown RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 HOXA11P31270 313 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 WDR5P61964 334 aaKnown RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 STIM1Q13586 685 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 AMHR2Q16671 573 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 BMT2Q1RMZ1 405 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 CT47A1Q5JQC4 288 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 ZNF658Q5TYW1 1059 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 ATF7IP2Q5U623 682 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 OTOP2Q7RTS6 562 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 MRPL10Q7Z7H8 261 aaKnown RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 NPAS4Q8IUM7 802 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 MAP4K3Q8IVH8 894 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 GOLGA5Q8TBA6 731 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 TMEM174Q8WUU8 243 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 VWCEQ96DN2 955 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 ZNF668Q96K58 619 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 RNPC3Q96LT9 517 aaKnown RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 TSPAN18Q96SJ8 248 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 TRIM6Q9C030 488 aaPredicted RBP9.05□□□□□ -0.96
USP54-212ENST00000480210 NUP62CLQ9H1M0 184 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 PRO3102Q9H379 93 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 TMX1Q9H3N1 280 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 CLSTN2Q9H4D0 955 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 POLD4Q9HCU8 107 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 FAM105AQ9NUU6 356 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 TMEM161AQ9NX61 479 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 KIAA1468Q9P260 1216 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 LRFN2Q9ULH4 789 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 PCDHA5Q9Y5H7 936 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 ADGRA3Q8IWK6 1321 aa9.05□□□□□ -0.96
USP54-212ENST00000480210 PTPRSQ13332 1948 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.04□□□□□ -0.96
USP54-212ENST00000480210 CLDN3O15551 220 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 MCF2P10911 925 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 GARTP22102 1010 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 PROZP22891 400 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 LIG4P49917 911 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 PNOCQ13519 176 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 MYBPC2Q14324 1141 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 SHHQ15465 462 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 MPZL3Q6UWV2 235 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 EPM2AIP1Q7L775 607 aaPredicted RBP9.04□□□□□ -0.96
USP54-212ENST00000480210 RTN4RL1Q86UN2 441 aaPredicted RBP9.04□□□□□ -0.96
USP54-212ENST00000480210 ECHDC2Q86YB7 292 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 CD302Q8IX05 232 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 GRAMD1CQ8IYS0 662 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 MYOCDQ8IZQ8 938 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 SYCP3Q8IZU3 236 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 GUF1Q8N442 669 aaKnown RBP9.04□□□□□ -0.96
USP54-212ENST00000480210 BICD1Q96G01 975 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 TCHPQ9BT92 498 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 GBP3Q9H0R5 595 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 KIAA1586Q9HCI6 787 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 PTPRHQ9HD43 1115 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 KANSL3Q9P2N6 904 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 GIT1Q9Y2X7 761 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 INSL6Q9Y581 213 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 STYXL1Q9Y6J8 313 aa9.04□□□□□ -0.96
USP54-212ENST00000480210 MYO9BQ13459 2157 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 PDCD11Q14690 1871 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 GBF1Q92538 1859 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 PDXKO00764 312 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 HNRNPDLO14979 420 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 CALUO43852 315 aaPredicted RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 CSDE1O75534 798 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 PRR29P0C7W0 189 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 ITGA4P13612 1032 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 ATP2A2P16615 1042 aaKnown RBP9.03□□□□□ -0.96
USP54-212ENST00000480210 FGFR4P22455 802 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 EPHB4P54760 987 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 MCL1Q07820 350 aa9.03□□□□□ -0.96
USP54-212ENST00000480210 CCDC173Q0VFZ6 552 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms