RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 NR1I2O75469 434 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 C1QL1O75973 258 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 SIM1P81133 766 aaPredicted RBP9.16□□□□□ -0.94
USP54-211ENST00000474929 PPM1LQ5SGD2 360 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 AGMOQ6ZNB7 445 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 KBTBD6Q86V97 674 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 NPAS3Q8IXF0 933 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 DEFB124Q8NES8 71 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 SMARCC2Q8TAQ2 1214 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 FAM200AQ8TCP9 573 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 DEPDC1BQ8WUY9 529 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 ZFP91Q96JP5 570 aaPredicted RBP9.16□□□□□ -0.94
USP54-211ENST00000474929 SDF4Q9BRK5 362 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 TRMT61BQ9BVS5 477 aaKnown RBP9.16□□□□□ -0.94
USP54-211ENST00000474929 GBP3Q9H0R5 595 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 CDHR5Q9HBB8 845 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 VAT1LQ9HCJ6 419 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 DKK4Q9UBT3 224 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 INPP5FQ9Y2H2 1132 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 PTPN13Q12923 2485 aa9.16□□□□□ -0.94
USP54-211ENST00000474929 GPR32O75388 356 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 PHKA2P46019 1235 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 CREB5Q02930 508 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 ALX1Q15699 326 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 PABPC1LQ4VXU2 614 aaKnown RBP9.15□□□□□ -0.94
USP54-211ENST00000474929 TCEAL6Q6IPX3 200 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 MFSD6Q6ZSS7 791 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 MIER1Q8N108 512 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 TCEAL3Q969E4 200 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 MTMR8Q96EF0 704 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 MBOAT7Q96N66 472 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 SCLT1Q96NL6 688 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 BCL11AQ9H165 835 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 C8orf33Q9H7E9 229 aaPredicted RBP9.15□□□□□ -0.94
USP54-211ENST00000474929 DNAJB4Q9UDY4 337 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 FBXW11Q9UKB1 542 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 TELO2Q9Y4R8 837 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 PCDHB15Q9Y5E8 787 aa9.15□□□□□ -0.94
USP54-211ENST00000474929 TICRRQ7Z2Z1 1910 aa9.15□□□□□ -0.95
USP54-211ENST00000474929 SDK1Q7Z5N4 2213 aa9.15□□□□□ -0.95
USP54-211ENST00000474929 COL4A2P08572 1712 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 NFASCO94856 1347 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 BCLAF3A2AJT9 711 aaKnown RBP9.14□□□□□ -0.95
USP54-211ENST00000474929 MAGEB2O15479 319 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 ANP32CO43423 234 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 ATG13O75143 517 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 SFPQP23246 707 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP54-211ENST00000474929 DPP6P42658 865 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 ABCG1P45844 678 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 CDC42EP1Q00587 391 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 PLK5Q496M5 336 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 ZMYM1Q5SVZ6 1142 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 TWF2Q6IBS0 349 aaKnown RBP9.14□□□□□ -0.95
USP54-211ENST00000474929 LILRA6Q6PI73 481 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 RAB44Q7Z6P3 723 aaPredicted RBP9.14□□□□□ -0.95
USP54-211ENST00000474929 SCUBE3Q8IX30 993 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 RNF168Q8IYW5 571 aaPredicted RBP9.14□□□□□ -0.95
USP54-211ENST00000474929 ST13P5Q8NFI4 369 aaPredicted RBP9.14□□□□□ -0.95
USP54-211ENST00000474929 PCYT2Q99447 389 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 SMOC1Q9H4F8 434 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 ZFP14Q9HCL3 533 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 AKT3Q9Y243 479 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 MYO9AB2RTY4 2548 aa9.14□□□□□ -0.95
USP54-211ENST00000474929 A0A087WV48 116 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 NRP1O14786 923 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 ATP9AO75110 1047 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 C22orf31O95567 290 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 VTNP04004 478 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 PRB1P04280 392 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 C8AP07357 584 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 DARSP14868 501 aaKnown RBP9.13□□□□□ -0.95
USP54-211ENST00000474929 PSMC3P17980 439 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 ACTR2P61160 394 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 KCNC4Q03721 635 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 GAS6Q14393 721 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 USP41Q3LFD5 358 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 PALB2Q86YC2 1186 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 CAMKK1Q8N5S9 505 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 METTL13Q8N6R0 699 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 CSGALNACT1Q8TDX6 532 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 PPP1R16BQ96T49 567 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 INO80BQ9C086 356 aaPredicted RBP9.13□□□□□ -0.95
USP54-211ENST00000474929 ZNF334Q9HCZ1 680 aaPredicted RBP9.13□□□□□ -0.95
USP54-211ENST00000474929 AVENQ9NQS1 362 aaPredicted RBP9.13□□□□□ -0.95
USP54-211ENST00000474929 POLIQ9UNA4 740 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 RAXQ9Y2V3 346 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 MRPS23Q9Y3D9 190 aaKnown RBP9.13□□□□□ -0.95
USP54-211ENST00000474929 CFAP46Q8IYW2 2715 aa9.13□□□□□ -0.95
USP54-211ENST00000474929 ASXL3Q9C0F0 2248 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 LAMA1P25391 3075 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 KLRF2D3W0D1 207 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 PIK3CDO00329 1044 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 BACH1O14867 736 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 PPP1R11O60927 126 aaPredicted RBP9.12□□□□□ -0.95
USP54-211ENST00000474929 ZNF623O75123 536 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 OFD1O75665 1012 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 SPATA31D3P0C874 917 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 NLRP11P59045 1033 aaKnown RBP9.12□□□□□ -0.95
USP54-211ENST00000474929 UVSSAQ2YD98 709 aa9.12□□□□□ -0.95
USP54-211ENST00000474929 UAP1L1Q3KQV9 507 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms