RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NXF3Q9H4D5 531 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 KANSL3Q9P2N6 904 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 DBR1Q9UK59 544 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 KMT2EQ8IZD2 1858 aa20.87■□□□□ 0.93
CCDC88B-206ENST00000473405 EPCAMP16422 314 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 MLH1P40692 756 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 HMGN5P82970 282 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 GIT2Q14161 759 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 BMS1Q14692 1282 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 ZNF174Q15697 407 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 TPRNQ4KMQ1 711 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 NOSTRINQ8IVI9 506 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 SLC22A17Q8WUG5 538 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 ZSCAN31Q96LW9 406 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 ZFP42Q96MM3 310 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 POLR3CQ9BUI4 534 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 ADAM7Q9H2U9 754 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 UBN1Q9NPG3 1134 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 SH2B1Q9NRF2 756 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 MARCH5Q9NX47 278 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 MYO15AQ9UKN7 3530 aa20.86■□□□□ 0.93
CCDC88B-206ENST00000473405 NRP1O14786 923 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 ZXDAP98168 799 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 ITIH3Q06033 890 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 DSC1Q08554 894 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 TTC38Q5R3I4 469 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 CDCA2Q69YH5 1023 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 CDR2LQ86X02 465 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 COLGALT2Q8IYK4 626 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 MCPH1Q8NEM0 835 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 FAM193BQ96PV7 902 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 GAD1Q99259 594 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 POMKQ9H5K3 350 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 DZANK1Q9NVP4 752 aa20.85■□□□□ 0.93
CCDC88B-206ENST00000473405 DMDP11532 3685 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 EFEMP2O95967 443 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 SP100P23497 879 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 RPA1P27694 616 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 RBM25P49756 843 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 SCNN1GP51170 649 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 NBR1Q14596 966 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 TRIM67Q6ZTA4 783 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 MAEAQ7L5Y9 396 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 C12orf76Q8N812 135 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 C4orf32Q8N8J7 132 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 FEZF2Q8TBJ5 459 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 NACC1Q96RE7 527 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 MIOSQ9NXC5 875 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 STK39Q9UEW8 545 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 FAN1Q9Y2M0 1017 aa20.84■□□□□ 0.93
CCDC88B-206ENST00000473405 A0A1B0GUA9 196 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 LRRIQ4A6NIV6 560 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 F8W810 466 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 LILRB3O75022 631 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 ALDH2P05091 517 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 SSBP05455 408 aaKnown RBP eCLIP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 CENPBP07199 599 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 WEE2P0C1S8 567 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 TRAPPC10P48553 1259 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 NCBP1Q09161 790 aaKnown RBP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 RARS2Q5T160 578 aaKnown RBP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 CES5AQ6NT32 575 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 KANK3Q6NY19 840 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 SLC27A1Q6PCB7 646 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 RNF168Q8IYW5 571 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 GSTCDQ8NEC7 633 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 BSNDQ8WZ55 320 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 NECTIN4Q96NY8 510 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 APOL6Q9BWW8 343 aa20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 TRIM6Q9C030 488 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 PRG3Q9Y2Y8 225 aaPredicted RBP20.83■□□□□ 0.93
CCDC88B-206ENST00000473405 ZMYM2Q9UBW7 1377 aa20.83■□□□□ 0.92
CCDC88B-206ENST00000473405 MYO10Q9HD67 2058 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 VPS13AQ96RL7 3174 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 TMEM221A6NGB7 291 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 TTLL13PA6NNM8 815 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 M0R296 226 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 NPTXRO95502 500 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 CNPP09543 421 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 PTPN21Q16825 1174 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 PPP4R3CPQ6ZMV5 832 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 FAM184AQ8NB25 1140 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 ERMNQ8TAM6 284 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 GIT1Q9Y2X7 761 aa20.82■□□□□ 0.92
CCDC88B-206ENST00000473405 SOD2P04179 222 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 AKAP5P24588 427 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 U2AF2P26368 475 aaKnown RBP eCLIP20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 OR1G1P47890 313 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 TOB1P50616 345 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 FXR2P51116 673 aaKnown RBP eCLIP20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 CLCN4P51793 760 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 GNL2Q13823 731 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 ECM1Q16610 540 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 KIAA1841Q6NSI8 718 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 PADI6Q6TGC4 694 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 TAS1R1Q7RTX1 841 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 TMEM87AQ8NBN3 555 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 PRIMPOLQ96LW4 560 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 KLHL5Q96PQ7 755 aa20.81■□□□□ 0.92
CCDC88B-206ENST00000473405 HERC2P3Q9BVR0 1158 aa20.81■□□□□ 0.92
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