RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PLS1Q14651 629 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ZFP69Q49AA0 526 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ARMCX5Q6P1M9 558 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 YTHDF3Q7Z739 585 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ARHGEF19Q8IW93 802 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ADSSL1Q8N142 457 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 MIGA1Q8NAN2 632 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 FNIP1Q8TF40 1166 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SLC12A5Q9H2X9 1139 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 UBA2Q9UBT2 640 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 VPS4AQ9UN37 437 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 H3BQF6 201 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 UBOX5O94941 541 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 APOL3O95236 402 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 HSMCR30P0CW71 290 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 AKAP5P24588 427 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SFNP31947 248 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SARSP49591 514 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 EIF2B5Q13144 721 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 RABL6Q3YEC7 729 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 MDH1BQ5I0G3 518 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SULT1C3Q6IMI6 304 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ERICH5Q6P6B1 374 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 LRRC34Q8IZ02 419 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 RIBC1Q8N443 379 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 L2HGDHQ9H9P8 463 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 STK17AQ9UEE5 414 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 HAO1Q9UJM8 370 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 STX8Q9UNK0 236 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 AK5Q9Y6K8 562 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 MAP3K1Q13233 1512 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 NACADO15069 1562 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 FAM187AA6NFU0 413 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 PFDN6O15212 129 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 GTPBP6O43824 516 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 EXOC3O60645 756 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TRMT5Q32P41 509 aaKnown RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TRIQKQ629K1 86 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 SCUBE1Q8IWY4 988 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 NELFCDQ8IXH7 590 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CCDC36Q8IYA8 594 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 POC5Q8NA72 575 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 JADE3Q92613 823 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 LRRC1Q9BTT6 524 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 DOLKQ9UPQ8 538 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ZBTB1Q9Y2K1 713 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 SBNO2Q9Y2G9 1366 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 A0A087WXM4 84 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 SRGAP2CP0DJJ0 459 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 SRGAP2BP0DMP2 458 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ATP1A3P13637 1013 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ENO3P13929 434 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ATF6P18850 670 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 PDZK1Q5T2W1 519 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 FOXR1Q6PIV2 292 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 POLNQ7Z5Q5 900 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CCDC60Q8IWA6 550 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TRIM51Q9BSJ1 452 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 GRIP2Q9C0E4 1043 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ELOVL6Q9H5J4 265 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CROTQ9UKG9 612 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 L1RE1Q9UN81 338 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 RPH3AQ9Y2J0 694 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ERBINQ96RT1 1412 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 LDHBP07195 334 aaKnown RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 RXRAP19793 462 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CHKAP35790 457 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 GRM1Q13255 1194 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TBCCQ15814 346 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ME3Q16798 604 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TTBK2Q6IQ55 1244 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 C11orf88Q6PI97 169 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 PNPT1Q8TCS8 783 aaKnown RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CEP95Q96GE4 821 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 TMOD3Q9NYL9 352 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 DDX20Q9UHI6 824 aaKnown RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ING4Q9UNL4 249 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 GOLGA8SH3BPF8 625 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 C21orf2O43822 256 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ATP6V1C1P21283 382 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 MSR1P21757 451 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 EPC2Q52LR7 807 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 SLC9A4Q6AI14 798 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 AGAP11Q8TF27 550 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CNOT6LQ96LI5 555 aaKnown RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 AIPL1Q9NZN9 384 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ARPP21Q9UBL0 812 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 PFDN2Q9UHV9 154 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 MYRFQ9Y2G1 1151 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ZSCAN9O15535 394 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 CCNKO75909 580 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ZBED1O96006 694 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 KRT1P04264 644 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 RAB27AP51159 221 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 ATXN3P54252 364 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 FOXD4Q12950 439 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 STAT4Q14765 748 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 E4F1Q66K89 784 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-210ENST00000473258 DYMQ7RTS9 669 aa9.49□□□□□ -0.89
COL6A3-210ENST00000473258 PM20D2Q8IYS1 436 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms