RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 XRCC6P12956 609 aaKnown RBP eCLIP18.5■□□□□ 0.55
USP40-212ENST00000473191 ITGA4P13612 1032 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 EPCAMP16422 314 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 U2AF2P26368 475 aaKnown RBP eCLIP18.5■□□□□ 0.556e-8■■■□□ 15.8
USP40-212ENST00000473191 RPA1P27694 616 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 SCNN1GP51170 649 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 POU5F1BQ06416 359 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 GSTCDQ8NEC7 633 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 URGCPQ8TCY9 931 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 RABGGTAQ92696 567 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 POP1Q99575 1024 aaKnown RBP18.5■□□□□ 0.55
USP40-212ENST00000473191 PHF7Q9BWX1 381 aaPredicted RBP18.5■□□□□ 0.55
USP40-212ENST00000473191 KLK14Q9P0G3 267 aa18.5■□□□□ 0.55
USP40-212ENST00000473191 DBR1Q9UK59 544 aaKnown RBP18.5■□□□□ 0.55
USP40-212ENST00000473191 PRG3Q9Y2Y8 225 aaPredicted RBP18.5■□□□□ 0.55
USP40-212ENST00000473191 PRR33A8MZF0 331 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 NPTXRO95502 500 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 CDC25AP30304 524 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 AXLP30530 894 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 GNL2Q13823 731 aaKnown RBP18.49■□□□□ 0.55
USP40-212ENST00000473191 PTPN14Q15678 1187 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 PADI6Q6TGC4 694 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 COLGALT2Q8IYK4 626 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 KIFC3Q9BVG8 833 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 NFKBIZQ9BYH8 718 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 CNTNAP2Q9UHC6 1331 aa18.49■□□□□ 0.55
USP40-212ENST00000473191 PTGDRQ13258 359 aa18.48■□□□□ 0.55
USP40-212ENST00000473191 CBX2Q14781 532 aaPredicted RBP18.48■□□□□ 0.55
USP40-212ENST00000473191 HERC4Q5GLZ8 1057 aaPredicted RBP18.48■□□□□ 0.55
USP40-212ENST00000473191 CDCA2Q69YH5 1023 aaPredicted RBP18.48■□□□□ 0.55
USP40-212ENST00000473191 SLC22A17Q8WUG5 538 aa18.48■□□□□ 0.55
USP40-212ENST00000473191 NACC1Q96RE7 527 aa18.48■□□□□ 0.55
USP40-212ENST00000473191 POMKQ9H5K3 350 aa18.48■□□□□ 0.55
USP40-212ENST00000473191 FAN1Q9Y2M0 1017 aa18.48■□□□□ 0.55
USP40-212ENST00000473191 TDRD15B5MCY1 1934 aaKnown RBP18.47■□□□□ 0.55
USP40-212ENST00000473191 A0A1B0GUA9 196 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 C2CD2LO14523 706 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 INPPL1O15357 1258 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 LILRB3O75022 631 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 ALDH2P05091 517 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 CYP11B2P19099 503 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 CCT6AP40227 531 aaKnown RBP18.47■□□□□ 0.55
USP40-212ENST00000473191 OR1G1P47890 313 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 FXR2P51116 673 aaKnown RBP eCLIP18.47■□□□□ 0.55
USP40-212ENST00000473191 DSC1Q08554 894 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 RABEP1Q15276 862 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 RARS2Q5T160 578 aaKnown RBP18.47■□□□□ 0.55
USP40-212ENST00000473191 HFE2Q6ZVN8 426 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 CASP10Q92851 521 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 TMX3Q96JJ7 454 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 B3GALT6Q96L58 329 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 FAM193BQ96PV7 902 aaPredicted RBP18.47■□□□□ 0.55
USP40-212ENST00000473191 TMEM175Q9BSA9 504 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 FZD8Q9H461 694 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 IRAK3Q9Y616 596 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 TRIOO75962 3097 aa18.47■□□□□ 0.55
USP40-212ENST00000473191 ARHGEF35A5YM69 484 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 EFEMP2O95967 443 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 CNPP09543 421 aaKnown RBP18.46■□□□□ 0.55
USP40-212ENST00000473191 MYBP10242 640 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 LIG1P18858 919 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 TRAPPC10P48553 1259 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 ORC2Q13416 577 aaPredicted RBP18.46■□□□□ 0.55
USP40-212ENST00000473191 PCBP1Q15365 356 aaKnown RBP eCLIP18.46■□□□□ 0.55
USP40-212ENST00000473191 SLC27A1Q6PCB7 646 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 CNNM3Q8NE01 707 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 MCPH1Q8NEM0 835 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 ERMNQ8TAM6 284 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 RSPH1Q8WYR4 309 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 CCDC51Q96ER9 411 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 KLHL5Q96PQ7 755 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 PAAF1Q9BRP4 392 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 TRIM6Q9C030 488 aaPredicted RBP18.46■□□□□ 0.55
USP40-212ENST00000473191 CCDC113Q9H0I3 377 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 BHMT2Q9H2M3 363 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 PDZD7Q9H5P4 517 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 DDX19AQ9NUU7 478 aaKnown RBP18.46■□□□□ 0.55
USP40-212ENST00000473191 KANSL3Q9P2N6 904 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 LRWD1Q9UFC0 647 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 NOL7Q9UMY1 257 aaKnown RBP18.46■□□□□ 0.55
USP40-212ENST00000473191 KIAA1024Q9UPX6 916 aa18.46■□□□□ 0.55
USP40-212ENST00000473191 FSD2A1L4K1 749 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 E9PMD0 336 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 SRGAP2BP0DMP2 458 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 HOXB8P17481 243 aaPredicted RBP18.45■□□□□ 0.54
USP40-212ENST00000473191 EEF1DP3Q658K8 133 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 PPP4R3CPQ6ZMV5 832 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 KCNK18Q7Z418 384 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 RNF168Q8IYW5 571 aaPredicted RBP18.45■□□□□ 0.54
USP40-212ENST00000473191 IGSF22Q8N9C0 903 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 MMTAG2Q9BU76 263 aaKnown RBP18.45■□□□□ 0.54
USP40-212ENST00000473191 ADAM7Q9H2U9 754 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.45■□□□□ 0.54
USP40-212ENST00000473191 PARP2Q9UGN5 583 aa18.45■□□□□ 0.54
USP40-212ENST00000473191 PLXNA3P51805 1871 aa18.44■□□□□ 0.54
USP40-212ENST00000473191 GJB2P29033 226 aa18.44■□□□□ 0.54
USP40-212ENST00000473191 CLCN4P51793 760 aa18.44■□□□□ 0.54
USP40-212ENST00000473191 NCBP1Q09161 790 aaKnown RBP18.44■□□□□ 0.54
USP40-212ENST00000473191 MCTP1Q6DN14 999 aa18.44■□□□□ 0.54
USP40-212ENST00000473191 TMC5Q6UXY8 1006 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms