RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PCBP1Q15365 356 aaKnown RBP eCLIP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 AMHR2Q16671 573 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 HAUS3Q68CZ6 603 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 ZNF280BQ86YH2 543 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 VPS52Q8N1B4 723 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 SMG8Q8ND04 991 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 MCPH1Q8NEM0 835 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 BCL7CQ8WUZ0 217 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 CCDC51Q96ER9 411 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 IGSF21Q96ID5 467 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 FAM193BQ96PV7 902 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 PHOX2BQ99453 314 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 APOL6Q9BWW8 343 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 TRIM6Q9C030 488 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 KIF3AQ9Y496 699 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 HES2Q9Y543 173 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 IPPQ9Y573 584 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 TECTAO75443 2155 aa17.43■□□□□ 0.38
CCDC88B-205ENST00000472524 C2orf71A6NGG8 1288 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 B4GALT5O43286 388 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 DDHD2O94830 711 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 CD2BP2O95400 341 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 ARF4P18085 180 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 CCT6AP40227 531 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 TOB1P50616 345 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 PTGDRQ13258 359 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 BMS1Q14692 1282 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 MCTP1Q6DN14 999 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 CDR2LQ86X02 465 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 C4orf32Q8N8J7 132 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 MRPL43Q8N983 215 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 CNNM3Q8NE01 707 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 AUTS2Q8WXX7 1259 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 ASIC4Q96FT7 647 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 TMX3Q96JJ7 454 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 NFKBIZQ9BYH8 718 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 CSRNP2Q9H175 543 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 PCDHB6Q9Y5E3 794 aa17.42■□□□□ 0.38
CCDC88B-205ENST00000472524 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 CARNS1A5YM72 827 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 CXCL14O95715 111 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 MLH1P40692 756 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 FXR2P51116 673 aaKnown RBP eCLIP17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 SIGLEC14Q08ET2 396 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 ECM1Q16610 540 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 PADI6Q6TGC4 694 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 SUGP1Q8IWZ8 645 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 FBXL6Q8N531 539 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 ZBP1Q9H171 429 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 RNF39Q9H2S5 420 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 NXF3Q9H4D5 531 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 KANSL3Q9P2N6 904 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 LRWD1Q9UFC0 647 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 HCFC2Q9Y5Z7 792 aa17.41■□□□□ 0.38
CCDC88B-205ENST00000472524 MYO10Q9HD67 2058 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 CLASP2O75122 1294 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 NPTXRO95502 500 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 HOXB8P17481 243 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 GJB2P29033 226 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 PTPN21Q16825 1174 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 DDX53Q86TM3 631 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 ZBTB8OSQ8IWT0 167 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 TMEM87AQ8NBN3 555 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 SNX29Q8TEQ0 813 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 BSNDQ8WZ55 320 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 CASP10Q92851 521 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 GAD1Q99259 594 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 UBN1Q9NPG3 1134 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 TSHZ2Q9NRE2 1034 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 ZNF318Q5VUA4 2279 aa17.4■□□□□ 0.38
CCDC88B-205ENST00000472524 PLXNA3P51805 1871 aa17.39■□□□□ 0.38
CCDC88B-205ENST00000472524 CTSAP10619 480 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 LIG1P18858 919 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 CYP11B2P19099 503 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 MUTP22033 750 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 SCNN1GP51170 649 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 VCPP55072 806 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 TMEM132AQ24JP5 1023 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 CDCA2Q69YH5 1023 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 SLC27A1Q6PCB7 646 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 HACE1Q8IYU2 909 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 ZFP42Q96MM3 310 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 TMEM175Q9BSA9 504 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 VN1R3Q9BXE9 311 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 RAB34Q9BZG1 259 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 POLD4Q9HCU8 107 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 DDX19AQ9NUU7 478 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 PRMT7Q9NVM4 692 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 KIAA1024Q9UPX6 916 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 FAN1Q9Y2M0 1017 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 PRG3Q9Y2Y8 225 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 C2orf16Q68DN1 1984 aa17.39■□□□□ 0.37
CCDC88B-205ENST00000472524 ARL5CA6NH57 179 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 PP2D1A8MPX8 630 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 H3BQV1 296 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 NRP1O14786 923 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 ALDH2P05091 517 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 SSBP05455 408 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 WEE2P0C1S8 567 aa17.38■□□□□ 0.37
CCDC88B-205ENST00000472524 AKAP5P24588 427 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms