RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CARD14Q9BXL6 1004 aa14.07□□□□□ -0.16
COL6A3-209ENST00000472056 SLC9A1P19634 815 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 DMC1Q14565 340 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ZNF473Q8WTR7 871 aaKnown RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 POP5Q969H6 163 aaKnown RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 CFAP69A5D8W1 941 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 TBKBP1A7MCY6 615 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 HEATR6Q6AI08 1181 aaKnown RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 GTSE1Q9NYZ3 720 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 STAP1Q9ULZ2 295 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 MAP3K4Q9Y6R4 1608 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 PKP1Q13835 747 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 HPS3Q969F9 1004 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 SEC16BQ96JE7 1060 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 VPS9D1Q9Y2B5 631 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ADGRG1Q9Y653 693 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 SPATA31E1Q6ZUB1 1445 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 MYH13Q9UKX3 1938 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 CLASP2O75122 1294 aaKnown RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 SLC20A2Q08357 652 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 GPS1Q13098 491 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 RUBCNLQ9H714 662 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 SAMSN1Q9NSI8 373 aaKnown RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 KLHL8Q9P2G9 620 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 TOM1O60784 492 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ROR1Q01973 937 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 TCIRG1Q13488 830 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 NSMFQ6X4W1 530 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ULK4Q96C45 1275 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ATAD3AQ9NVI7 634 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 KCND2Q9NZV8 630 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 SLC12A1Q13621 1099 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ARMCX4Q5H9R4 360 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 TMEM154Q6P9G4 183 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ANGPTL8Q6UXH0 198 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 GUF1Q8N442 669 aaKnown RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 ADNPQ9H2P0 1102 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 SEPT9Q9UHD8 586 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 GINS2Q9Y248 185 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 CSADQ9Y600 493 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 PRDM1O75626 825 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 FAM47EQ6ZV65 393 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 IKBIPQ70UQ0 350 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 RAB42Q8N4Z0 105 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 JADE3Q92613 823 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 UBA2Q9UBT2 640 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-209ENST00000472056 LEMD3Q9Y2U8 911 aa14.06□□□□□ -0.16
COL6A3-209ENST00000472056 PNMA6FA0A0J9YX94 578 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 ZNF483Q8TF39 744 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 CCT7Q99832 543 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 TK2O00142 265 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 PSAPP07602 524 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 SNRPFP62306 86 aaKnown RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 CCNA1P78396 465 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 CCDC126Q96EE4 140 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 SELENONQ9NZV5 590 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 PDE8BO95263 885 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 C4orf50Q6ZRC1 276 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 STAG2Q8N3U4 1231 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 FLAD1Q8NFF5 587 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 RPF1Q9H9Y2 349 aaKnown RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 KRCC1Q9NPI7 259 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 PRR23AA6NEV1 266 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 DNAJC6O75061 913 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 NDUFA5Q16718 116 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 GPR141Q7Z602 305 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 TLK2Q86UE8 772 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 SYN2Q92777 582 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 LRRC31Q6UY01 552 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 MMADHCQ9H3L0 296 aaPredicted RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 ZFATQ9P243 1243 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 ORC4O43929 436 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 PKN2Q16513 984 aaKnown RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 ZCWPW2Q504Y3 356 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 NUP85Q9BW27 656 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 UTP6Q9NYH9 597 aaKnown RBP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 CASZ1Q86V15 1759 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 MYH7BA7E2Y1 1941 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 MTSS1O43312 755 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 XXYLT1Q8NBI6 393 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 SERPINB12Q96P63 405 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 FTOQ9C0B1 505 aaKnown RBP eCLIP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.05□□□□□ -0.16
COL6A3-209ENST00000472056 CCDC87Q9NVE4 849 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 DNAJC12Q9UKB3 198 aa14.05□□□□□ -0.16
COL6A3-209ENST00000472056 PJA2O43164 708 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 RPS8P62241 208 aaKnown RBP14.04□□□□□ -0.16
COL6A3-209ENST00000472056 TAB1Q15750 504 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 PRRG3Q9BZD7 231 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 DCTN4Q9UJW0 460 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 COBLO75128 1261 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 YY1P25490 414 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 CC2D2BQ6DHV5 1058 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 SLC16A3O15427 465 aaKnown RBP14.04□□□□□ -0.16
COL6A3-209ENST00000472056 CCDC103Q8IW40 242 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 PRG3Q9Y2Y8 225 aaPredicted RBP14.04□□□□□ -0.16
COL6A3-209ENST00000472056 TRMT5Q32P41 509 aaKnown RBP14.04□□□□□ -0.16
COL6A3-209ENST00000472056 BBS7Q8IWZ6 715 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 TAGAPQ8N103 731 aa14.04□□□□□ -0.16
COL6A3-209ENST00000472056 ZNF564Q8TBZ8 553 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms