RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 SORCS3Q9UPU3 1222 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 NR2E1Q9Y466 385 aa22.96■■□□□ 1.27
COL6A1-203ENST00000466285 VPS13AQ96RL7 3174 aa22.95■■□□□ 1.27
COL6A1-203ENST00000466285 GLRA2P23416 452 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 PTPN5P54829 565 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 RNF168Q8IYW5 571 aaPredicted RBP22.95■■□□□ 1.26
COL6A1-203ENST00000466285 TMEM105Q8N8V8 129 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 PIGOQ8TEQ8 1089 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 RABGGTAQ92696 567 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 DOCK6Q96HP0 2047 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 RIPOR3Q96MK2 946 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 LIMD1Q9UGP4 676 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 CNTNAP2Q9UHC6 1331 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 DBR1Q9UK59 544 aaKnown RBP22.95■■□□□ 1.26
COL6A1-203ENST00000466285 PPME1Q9Y570 386 aa22.95■■□□□ 1.26
COL6A1-203ENST00000466285 CFAP54Q96N23 3096 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 ARL5CA6NH57 179 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 TTLL13PA6NNM8 815 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 MARCH6O60337 910 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 DKC1O60832 514 aaKnown RBP eCLIP22.94■■□□□ 1.26
COL6A1-203ENST00000466285 N4BP1O75113 896 aaKnown RBP22.94■■□□□ 1.26
COL6A1-203ENST00000466285 ERLIN2O94905 339 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 ARF4P18085 180 aaPredicted RBP22.94■■□□□ 1.26
COL6A1-203ENST00000466285 RARRES1P49788 294 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 DSC1Q08554 894 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 MTMR3Q13615 1198 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 CALCRLQ16602 461 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 CABP7Q86V35 215 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 DIS3L2Q8IYB7 885 aaKnown RBP22.94■■□□□ 1.26
COL6A1-203ENST00000466285 TCP11Q8WWU5 503 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 TMEM175Q9BSA9 504 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 HERC2P3Q9BVR0 1158 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 CXCL16Q9H2A7 254 aa22.94■■□□□ 1.26
COL6A1-203ENST00000466285 VWA8A3KMH1 1905 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 MTCL1Q9Y4B5 1905 aaKnown RBP22.93■■□□□ 1.26
COL6A1-203ENST00000466285 INO80B-WBP1J3KQ70 363 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 INPPL1O15357 1258 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 ITGA4P13612 1032 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 XBP1P17861 261 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 ARL2P36404 184 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 GPR149Q86SP6 731 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 IFNLR1Q8IU57 520 aaPredicted RBP22.93■■□□□ 1.26
COL6A1-203ENST00000466285 SLFN12Q8IYM2 578 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 GSTCDQ8NEC7 633 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 RSPH1Q8WYR4 309 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 MTMR9Q96QG7 549 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 TTC12Q9H892 705 aaPredicted RBP22.93■■□□□ 1.26
COL6A1-203ENST00000466285 SFXN1Q9H9B4 322 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 FAN1Q9Y2M0 1017 aa22.93■■□□□ 1.26
COL6A1-203ENST00000466285 GAS2O43903 313 aaKnown RBP22.92■■□□□ 1.26
COL6A1-203ENST00000466285 USO1O60763 962 aaKnown RBP22.92■■□□□ 1.26
COL6A1-203ENST00000466285 LYPLA2O95372 231 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 SOD2P04179 222 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 EDN1P05305 212 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 AKAP5P24588 427 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 KLRC2P26717 231 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 TXKP42681 527 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 OR1G1P47890 313 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 GUCY1B3Q02153 619 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 OTUD6AQ7L8S5 288 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 ZDHHC14Q8IZN3 488 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 CSRNP2Q9H175 543 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 POLR3FQ9H1D9 316 aaPredicted RBP22.92■■□□□ 1.26
COL6A1-203ENST00000466285 MAN1C1Q9NR34 630 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 USP20Q9Y2K6 914 aa22.92■■□□□ 1.26
COL6A1-203ENST00000466285 TEX28O15482 410 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 NEMFO60524 1076 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 SEC24BO95487 1268 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 SPATA31C1P0DKV0 1188 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 ANAPC15P60006 121 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 GIT2Q14161 759 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 ATAT1Q5SQI0 421 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 NOTUMQ6P988 496 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 MAEAQ7L5Y9 396 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 TMEM87AQ8NBN3 555 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 FAM193BQ96PV7 902 aaPredicted RBP22.91■■□□□ 1.26
COL6A1-203ENST00000466285 NAP1L4Q99733 375 aaKnown RBP22.91■■□□□ 1.26
COL6A1-203ENST00000466285 PAAF1Q9BRP4 392 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 KLK14Q9P0G3 267 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 PCDHA12Q9UN75 941 aa22.91■■□□□ 1.26
COL6A1-203ENST00000466285 COL4A3Q01955 1670 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 H0Y858 1186 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 ASAP2O43150 1006 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 MED24O75448 989 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 RFPL2O75678 378 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 NPTXRO95502 500 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 SPATA31D3P0C874 917 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 CWF19L1Q69YN2 538 aaKnown RBP22.9■■□□□ 1.26
COL6A1-203ENST00000466285 POTEGQ6S5H5 508 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 SPATA31D4Q6ZUB0 917 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 BSNDQ8WZ55 320 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 RPS6KC1Q96S38 1066 aa22.9■■□□□ 1.26
COL6A1-203ENST00000466285 TRIP11Q15643 1979 aa22.89■■□□□ 1.26
COL6A1-203ENST00000466285 ZFHX2Q9C0A1 2572 aaPredicted RBP22.89■■□□□ 1.25
COL6A1-203ENST00000466285 BAG4O95429 457 aaKnown RBP22.89■■□□□ 1.25
COL6A1-203ENST00000466285 ALDH2P05091 517 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 URODP06132 367 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 BMS1Q14692 1282 aaKnown RBP22.89■■□□□ 1.25
COL6A1-203ENST00000466285 KIAA0319Q5VV43 1072 aa22.89■■□□□ 1.25
COL6A1-203ENST00000466285 EXOC8Q8IYI6 725 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms