RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 GTPBP6O43824 516 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-204ENST00000463487 KINO60870 393 aaKnown RBP21.73■■□□□ 1.07
COL9A3-204ENST00000463487 GCNT3O95395 438 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 COASYQ13057 564 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 PPP2R2DQ66LE6 453 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 GLB1LQ6UWU2 654 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 ZPBP2Q6X784 338 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 CMTR2Q8IYT2 770 aaKnown RBP21.73■■□□□ 1.07
COL9A3-204ENST00000463487 FMR1NBQ8N0W7 255 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-204ENST00000463487 BLZF1Q9H2G9 400 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 TBX20Q9UMR3 447 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 TNFSF13BQ9Y275 285 aa21.73■■□□□ 1.07
COL9A3-204ENST00000463487 HNRNPDLO14979 420 aaKnown RBP21.72■■□□□ 1.07
COL9A3-204ENST00000463487 NPTXRO95502 500 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 CA3P07451 260 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 ITGA4P13612 1032 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 NMT1P30419 496 aaKnown RBP21.72■■□□□ 1.07
COL9A3-204ENST00000463487 PBX2P40425 430 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 LIG4P49917 911 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 GTF2BQ00403 316 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 BTG3Q14201 252 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-204ENST00000463487 ZNF568Q3ZCX4 644 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 ZNF697Q5TEC3 545 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 ZNF720Q7Z2F6 126 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 CRIPAKQ8N1N5 446 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 FIBCD1Q8N539 461 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 ACO2Q99798 780 aaKnown RBP21.72■■□□□ 1.07
COL9A3-204ENST00000463487 TCHPQ9BT92 498 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 NKX2-4Q9H2Z4 354 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 PDZD7Q9H5P4 517 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 EXOC1Q9NV70 894 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 RWDD3Q9Y3V2 267 aa21.72■■□□□ 1.07
COL9A3-204ENST00000463487 SOX1O00570 391 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 PRPF40AO75400 957 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TOM1L1O75674 476 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 CUL4BQ13620 913 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 FAM26FQ5R3K3 315 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 UBXN11Q5T124 520 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 NT5DC1Q5TFE4 455 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TAS1R3Q7RTX0 852 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 MRPL10Q7Z7H8 261 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 ZNF598Q86UK7 904 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 URGCPQ8TCY9 931 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 SP7Q8TDD2 431 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 ZNF689Q96CS4 500 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 LRCH3Q96II8 777 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TIGD1Q96MW7 591 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 FIZ1Q96SL8 496 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TARS2Q9BW92 718 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 EIF2AQ9BY44 585 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 MRPL9Q9BYD2 267 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TMEM117Q9H0C3 514 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TBC1D7Q9P0N9 293 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 YBX2Q9Y2T7 364 aaKnown RBP21.71■■□□□ 1.07
COL9A3-204ENST00000463487 IPPQ9Y573 584 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 COL4A6Q14031 1691 aa21.71■■□□□ 1.07
COL9A3-204ENST00000463487 TBKBP1A7MCY6 615 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 FGFR1P11362 822 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 MATR3P43243 847 aaKnown RBP eCLIP21.7■■□□□ 1.06
COL9A3-204ENST00000463487 MPZL3Q6UWV2 235 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 MAP4K3Q8IVH8 894 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 GRAMD1CQ8IYS0 662 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 SAMD11Q96NU1 681 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 ACCSQ96QU6 501 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 TMEM206Q9H813 350 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 RSAD1Q9HA92 442 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 ANKFY1Q9P2R3 1169 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 GBF1Q92538 1859 aa21.7■■□□□ 1.06
COL9A3-204ENST00000463487 RBAK-RBAKDNI3L0D1 243 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 CLDN3O15551 220 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 PIGRP01833 764 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 MCF2P10911 925 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 MYOGP15173 224 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 ATF7P17544 494 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-204ENST00000463487 FXR1P51114 621 aaKnown RBP eCLIP21.69■■□□□ 1.06
COL9A3-204ENST00000463487 PSMD2Q13200 908 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 POSTNQ15063 836 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 KYAT1Q16773 422 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 L1TD1Q5T7N2 865 aaKnown RBP21.69■■□□□ 1.06
COL9A3-204ENST00000463487 CDR2LQ86X02 465 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-204ENST00000463487 SYCP3Q8IZU3 236 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 LRRC43Q8N309 656 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 ENGASEQ8NFI3 743 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 GIT1Q9Y2X7 761 aa21.69■■□□□ 1.06
COL9A3-204ENST00000463487 CARNS1A5YM72 827 aa21.68■■□□□ 1.06
COL9A3-204ENST00000463487 EIF3DO15371 548 aaKnown RBP eCLIP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 NR1I2O75469 434 aa21.68■■□□□ 1.06
COL9A3-204ENST00000463487 SMC2O95347 1197 aa21.68■■□□□ 1.06
COL9A3-204ENST00000463487 SNW1Q13573 536 aaKnown RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 NOLC1Q14978 699 aaKnown RBP eCLIP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 PAN2Q504Q3 1202 aaKnown RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 ZC2HC1CQ53FD0 456 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 SLFN12LQ6IEE8 588 aa21.68■■□□□ 1.06
COL9A3-204ENST00000463487 TGS1Q96RS0 853 aaKnown RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 CCDC94Q9BW85 323 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 NXF3Q9H4D5 531 aaKnown RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 ZNF576Q9H609 170 aa21.68■■□□□ 1.06
COL9A3-204ENST00000463487 RC3H2Q9HBD1 1191 aaKnown RBP21.68■■□□□ 1.06
COL9A3-204ENST00000463487 AAASQ9NRG9 546 aa21.68■■□□□ 1.06
COL9A3-204ENST00000463487 KANSL3Q9P2N6 904 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms