RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 MAP3K20Q9NYL2 800 aaKnown RBP13.05□□□□□ -0.32
COL27A1-202ENST00000451716 GGA3Q9NZ52 723 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 TBX20Q9UMR3 447 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 ANKRD33BA6NCL7 494 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 GOLGA6BA6NDN3 693 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 LMNB1P20700 586 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 CNGA1P29973 690 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 SFNP31947 248 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 DSG3P32926 999 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 GUCY2FP51841 1108 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 FSTL1Q12841 308 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 IFI16Q16666 785 aaKnown RBP13.05□□□□□ -0.32
COL27A1-202ENST00000451716 A1CFQ9NQ94 594 aaKnown RBP13.05□□□□□ -0.32
COL27A1-202ENST00000451716 KMT5AQ9NQR1 393 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 DOCK5Q9H7D0 1870 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 PFASO15067 1338 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 ADGRA3Q8IWK6 1321 aa13.05□□□□□ -0.32
COL27A1-202ENST00000451716 COL11A1P12107 1806 aaPredicted RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 MAPTP10636 758 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 ITGA4P13612 1032 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 KCNA2P16389 499 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 AARSP49588 968 aaKnown RBP eCLIP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 MXI1P50539 228 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 NCKAP1LP55160 1127 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 DMP1Q13316 513 aaPredicted RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 R3HDM1Q15032 1099 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 SNRNP35Q16560 246 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 NT5DC3Q86UY8 548 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 CCDC60Q8IWA6 550 aaPredicted RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 PPM1KQ8N3J5 372 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 CTNNBL1Q8WYA6 563 aaPredicted RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 SEMA4DQ92854 862 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 EXOC4Q96A65 974 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 MTFR1LQ9H019 292 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 DDX47Q9H0S4 455 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 AS3MTQ9HBK9 375 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 ALCAMQ13740 583 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 EPC2Q52LR7 807 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 NAA35Q5VZE5 725 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 MMS22LQ6ZRQ5 1243 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 ADAT2Q7Z6V5 191 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 NSUN6Q8TEA1 469 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 CASKIN2Q8WXE0 1202 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 FAXDC2Q96IV6 333 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 CYP39A1Q9NYL5 469 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 SEPT9Q9UHD8 586 aaPredicted RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 ZNF112Q9UJU3 913 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 COG5Q9UP83 839 aa13.04□□□□□ -0.32
COL27A1-202ENST00000451716 NOC2LQ9Y3T9 749 aaKnown RBP13.04□□□□□ -0.32
COL27A1-202ENST00000451716 SGPL1O95470 568 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 ZBTB48P10074 688 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 ANXA13P27216 316 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 SMTNP53814 917 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 EPHB4P54760 987 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 CETN1Q12798 172 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 MYBPC2Q14324 1141 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 SLC39A4Q6P5W5 647 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 NLGN2Q8NFZ4 835 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 AGPAT1Q99943 283 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 GINM1Q9NU53 330 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 KIAA1217Q5T5P2 1943 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 LOXHD1Q8IVV2 1947 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 CALCAP01258 141 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 DLATP10515 647 aaKnown RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 HIRAP54198 1017 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 SP2Q02086 613 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 SLFN11Q7Z7L1 901 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 DDX42Q86XP3 938 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 IFT20Q8IY31 132 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 RPUSD2Q8IZ73 545 aaKnown RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 RFFLQ8WZ73 363 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 KLRG1Q96E93 195 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 JPH1Q9HDC5 661 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 ANKEF1Q9NU02 776 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 ETAA1Q9NY74 926 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 STXBP5LQ9Y2K9 1186 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 CYP26A1O43174 497 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 ATMINO43313 823 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 STBD1O95210 358 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 FTLP02792 175 aaPredicted RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 TMEM253P0C7T8 217 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 PRPF4BQ13523 1007 aaKnown RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 KIF22Q14807 665 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 GLE1Q53GS7 698 aaKnown RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 CYFIP1Q7L576 1253 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 C12orf56Q8IXR9 622 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 LMBR1Q8WVP7 490 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 POMGNT1Q8WZA1 660 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 GPRASP2Q96D09 838 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 THOC1Q96FV9 657 aaKnown RBP13.03□□□□□ -0.32
COL27A1-202ENST00000451716 KREMEN1Q96MU8 473 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 TEX13BQ9BXU2 312 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 GDF3Q9NR23 364 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 TMEM59LQ9UK28 342 aa13.03□□□□□ -0.32
COL27A1-202ENST00000451716 A0A0A6YYK5 440 aaPredicted RBP13.02□□□□□ -0.33
COL27A1-202ENST00000451716 TMEM110-MUSTN1A8MSY1 372 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 KRIT1O00522 736 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 COPB2P35606 906 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 ACTR2P61160 394 aa13.02□□□□□ -0.33
COL27A1-202ENST00000451716 PRKCEQ02156 737 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms