RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TYRO3Q06418 890 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 STX1AQ16623 288 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 SLFN12LQ6IEE8 588 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 CNKSR3Q6P9H4 555 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 APBB1IPQ7Z5R6 666 aaPredicted RBP17.29■□□□□ 0.36
USP40-206ENST00000443711 GOLGA5Q8TBA6 731 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 CCDC51Q96ER9 411 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 TCHPQ9BT92 498 aa17.29■□□□□ 0.36
USP40-206ENST00000443711 CGNQ9P2M7 1197 aaKnown RBP17.29■□□□□ 0.36
USP40-206ENST00000443711 ANKRD63C9JTQ0 380 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 PDXKO00764 312 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 TOM1L1O75674 476 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 MATR3P43243 847 aaKnown RBP eCLIP17.28■□□□□ 0.36
USP40-206ENST00000443711 DSC3Q14574 896 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 DPCR1Q3MIW9 517 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 CT47A1Q5JQC4 288 aaPredicted RBP17.28■□□□□ 0.36
USP40-206ENST00000443711 SLC27A1Q6PCB7 646 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 HS2ST1Q7LGA3 356 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 ADPGKQ9BRR6 497 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 KCTD10Q9H3F6 313 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 TMX1Q9H3N1 280 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 PDZD7Q9H5P4 517 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 TYW1Q9NV66 732 aaKnown RBP17.28■□□□□ 0.36
USP40-206ENST00000443711 ZMYM2Q9UBW7 1377 aa17.28■□□□□ 0.36
USP40-206ENST00000443711 CLDN3O15551 220 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 TGFB1I1O43294 461 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 CALUO43852 315 aaPredicted RBP17.27■□□□□ 0.36
USP40-206ENST00000443711 ACTN1P12814 892 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 PROZP22891 400 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 CCNE1P24864 410 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 IKBKEQ14164 716 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 EEF1DP3Q658K8 133 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 TWF2Q6IBS0 349 aaKnown RBP17.27■□□□□ 0.36
USP40-206ENST00000443711 CENPPQ6IPU0 288 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 KLHL10Q6JEL2 608 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 SLC39A4Q6P5W5 647 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 MPZL3Q6UWV2 235 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 P2RX5Q93086 422 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 VWCEQ96DN2 955 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 TSG101Q99816 390 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 ADAM2Q99965 735 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 GZF1Q9H116 711 aaPredicted RBP17.27■□□□□ 0.36
USP40-206ENST00000443711 IKZF4Q9H2S9 585 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 SEMA6BQ9H3T3 888 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 PTPRHQ9HD43 1115 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 TRAF3IP3Q9Y228 551 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 STYXL1Q9Y6J8 313 aa17.27■□□□□ 0.36
USP40-206ENST00000443711 MGEA5O60502 916 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 ACRP10323 421 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 MCF2P10911 925 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 GARTP22102 1010 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 DCAF4L1Q3SXM0 396 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 ZNF568Q3ZCX4 644 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 ARMCX5Q6P1M9 558 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 ZBTB33Q86T24 672 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 RTN4RL1Q86UN2 441 aaPredicted RBP17.26■□□□□ 0.35
USP40-206ENST00000443711 CDR2LQ86X02 465 aaPredicted RBP17.26■□□□□ 0.35
USP40-206ENST00000443711 NELFBQ8WX92 580 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 POMGNT1Q8WZA1 660 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 ZBTB45Q96K62 511 aaPredicted RBP17.26■□□□□ 0.35
USP40-206ENST00000443711 ANP32EQ9BTT0 268 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 TRAIPQ9BWF2 469 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 AGPAT3Q9NRZ7 376 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 RGS18Q9NS28 235 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 C1orf112Q9NSG2 853 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 ANKFY1Q9P2R3 1169 aa17.26■□□□□ 0.35
USP40-206ENST00000443711 MICAL3Q7RTP6 2002 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 A0A0B4J269 797 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 ABHD14A-ACY1A0A1B0GW23 586 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 BICDL2A1A5D9 508 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 TISP43B9A030 160 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 ENPP3O14638 875 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 ABLIM1O14639 778 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 KIAA0391O15091 583 aaKnown RBP17.25■□□□□ 0.35
USP40-206ENST00000443711 EFCAB14O75071 495 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 NPTXRO95502 500 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 FGBP02675 491 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 SKIP12755 728 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 ERCC5P28715 1186 aaPredicted RBP17.25■□□□□ 0.35
USP40-206ENST00000443711 RAB27AP51159 221 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 LRRC63Q05C16 580 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 MCL1Q07820 350 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 PAK1Q13153 545 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 NOLC1Q14978 699 aaKnown RBP eCLIP17.25■□□□□ 0.35
USP40-206ENST00000443711 TCTN1Q2MV58 587 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 UBXN11Q5T124 520 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 C12orf56Q8IXR9 622 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 FUCA2Q9BTY2 467 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 MSTO1Q9BUK6 570 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 TRIM6Q9C030 488 aaPredicted RBP17.25■□□□□ 0.35
USP40-206ENST00000443711 CDT1Q9H211 546 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 TSPYL2Q9H2G4 693 aaPredicted RBP17.25■□□□□ 0.35
USP40-206ENST00000443711 CTNND2Q9UQB3 1225 aa17.25■□□□□ 0.35
USP40-206ENST00000443711 RBAK-RBAKDNI3L0D1 243 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 CLIC2O15247 247 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 RPL13P26373 211 aaKnown RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 ADSSP30520 456 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 MYBPC2Q14324 1141 aa17.24■□□□□ 0.35
USP40-206ENST00000443711 HSP90AA2PQ14568 343 aaPredicted RBP17.24■□□□□ 0.35
USP40-206ENST00000443711 NFIL3Q16649 462 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms