RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 CCDC121Q6ZUS5 278 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 MYRIPQ8NFW9 859 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 MEIS2O14770 477 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 VIMP08670 466 aaKnown RBP13.88□□□□□ -0.19
PTCH1-207ENST00000429896 RAG1P15918 1043 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 KIZQ2M2Z5 673 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 BTBD7Q9P203 1132 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 ELNP15502 786 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 PEX26Q7Z412 305 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 AAASQ9NRG9 546 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 RAB20Q9NX57 234 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 MARF1Q9Y4F3 1742 aaKnown RBP13.88□□□□□ -0.19
PTCH1-207ENST00000429896 HOXA2O43364 376 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 GNRH1P01148 92 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 H2AFZP0C0S5 128 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 CPB1P15086 417 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 SKIV2LQ15477 1246 aaKnown RBP13.88□□□□□ -0.19
PTCH1-207ENST00000429896 SH3D19Q5HYK7 790 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 H2AFVQ71UI9 128 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 FAM133AQ8N9E0 248 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 SLC12A6Q9UHW9 1150 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 UBIAD1Q9Y5Z9 338 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 ACOT2P49753 483 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 TAF2Q6P1X5 1199 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 USP49Q70CQ1 688 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 ANKS4BQ8N8V4 417 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 HPS3Q969F9 1004 aa13.88□□□□□ -0.19
PTCH1-207ENST00000429896 RNF8O76064 485 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 RHOBTB3O94955 611 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 ZC2HC1CQ53FD0 456 aaPredicted RBP13.87□□□□□ -0.19
PTCH1-207ENST00000429896 OR6B2Q6IFH4 312 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 SENP7Q9BQF6 1050 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 PPP1R12CQ9BZL4 782 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 FAM204AQ9H8W3 233 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 PGK1P00558 417 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 CD4P01730 458 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 KCNH2Q12809 1159 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.87□□□□□ -0.19
PTCH1-207ENST00000429896 MSL3Q8N5Y2 521 aaKnown RBP13.87□□□□□ -0.19
PTCH1-207ENST00000429896 CFAP57Q96MR6 1250 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 CCDC85CA6NKD9 419 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 OTOP1Q7RTM1 612 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 FRMD5Q7Z6J6 570 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 DEFB128Q7Z7B8 93 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 ZNF710Q8N1W2 664 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 COPS5Q92905 334 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 DNAJC12Q9UKB3 198 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 RBP5P82980 135 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 PTPAQ15257 358 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 SCN4BQ8IWT1 228 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 RPUSD2Q8IZ73 545 aaKnown RBP13.87□□□□□ -0.19
PTCH1-207ENST00000429896 RNF139Q8WU17 664 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 INTS2Q9H0H0 1204 aaKnown RBP13.87□□□□□ -0.19
PTCH1-207ENST00000429896 PIDD1Q9HB75 910 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 TBX20Q9UMR3 447 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 RBL2Q08999 1139 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 CASC4Q6P4E1 433 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 PORCNQ9H237 461 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 ZNF112Q9UJU3 913 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 OPA1O60313 960 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 HSD17B4P51659 736 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 TAB3Q8N5C8 712 aaPredicted RBP13.87□□□□□ -0.19
PTCH1-207ENST00000429896 AMFRQ9UKV5 643 aa13.87□□□□□ -0.19
PTCH1-207ENST00000429896 PDZD4Q76G19 769 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-207ENST00000429896 DNAJB3Q8WWF6 145 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 DEFB118Q96PH6 123 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 NFASCO94856 1347 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 GRIN1Q05586 938 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 CLUL1Q15846 466 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 NAPGQ99747 312 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-207ENST00000429896 SLITRK6Q9H5Y7 841 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 IFT122Q9HBG6 1241 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 ACTN4O43707 911 aaKnown RBP13.86□□□□□ -0.19
PTCH1-207ENST00000429896 KIFC3Q9BVG8 833 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 GPRC5CQ9NQ84 441 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 AGAP1Q9UPQ3 857 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 A8MXQ7 604 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 GOLGA8SH3BPF8 625 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 EXTL3O43909 919 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 ZNF394Q53GI3 561 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 LMBRD2Q68DH5 695 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-207ENST00000429896 SRGAP1Q7Z6B7 1085 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 NR2E3Q9Y5X4 410 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 A6NJR5 290 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 MAN1A1P33908 653 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 FMR1Q06787 632 aaKnown RBP eCLIP13.86□□□□□ -0.192e-7■■■■■ 26.8
PTCH1-207ENST00000429896 RPS6KA1Q15418 735 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 SNRNP35Q16560 246 aaKnown RBP13.86□□□□□ -0.19
PTCH1-207ENST00000429896 GJC2Q5T442 439 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-207ENST00000429896 EMSYQ7Z589 1322 aa13.86□□□□□ -0.19
PTCH1-207ENST00000429896 ATP2A2P16615 1042 aaKnown RBP13.85□□□□□ -0.19
PTCH1-207ENST00000429896 KRT222Q8N1A0 295 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-207ENST00000429896 BPIFA3Q9BQP9 254 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 CREBZFQ9NS37 354 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 CLTAP09496 248 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 TRIM49P0CI25 452 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 TRIM49CP0CI26 452 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 SATB1Q01826 763 aa13.85□□□□□ -0.19
PTCH1-207ENST00000429896 LAMTOR4Q0VGL1 99 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms