RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PPFIBP1Q86W92 1011 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 PALB2Q86YC2 1186 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 TPH2Q8IWU9 490 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 COLGALT2Q8IYK4 626 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 ASAP3Q8TDY4 903 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 PSPC1Q8WXF1 523 aaKnown RBP9.05□□□□□ -0.96
VIM-202ENST00000421459 SLC7A3Q8WY07 619 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 ACSF2Q96CM8 615 aaPredicted RBP9.05□□□□□ -0.96
VIM-202ENST00000421459 ZNF274Q96GC6 653 aaPredicted RBP9.05□□□□□ -0.96
VIM-202ENST00000421459 RPS6KC1Q96S38 1066 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 MYADMQ96S97 322 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 LXNQ9BS40 222 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 PHF20Q9BVI0 1012 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 C22orf23Q9BZE7 217 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 XPNPEP1Q9NQW7 623 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 MRPL17Q9NRX2 175 aaKnown RBP9.05□□□□□ -0.96
VIM-202ENST00000421459 FBXL21Q9UKT6 434 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 CYP46A1Q9Y6A2 500 aa9.05□□□□□ -0.96
VIM-202ENST00000421459 PLXNA3P51805 1871 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 WDR87Q6ZQQ6 2873 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 ZDBF2Q9HCK1 2354 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 CCDC194A0A1B0GVG4 234 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 STK25O00506 426 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 WNT7AO00755 349 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 INPPL1O15357 1258 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 SLITRK3O94933 977 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 CTDNEP1O95476 244 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 EFEMP2O95967 443 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 AOC1P19801 751 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 GBP2P32456 591 aaPredicted RBP9.04□□□□□ -0.96
VIM-202ENST00000421459 CLCN5P51795 746 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 SPIRE1Q08AE8 756 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 NR5A1Q13285 461 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 EPHA7Q15375 998 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 MOXD1Q6UVY6 613 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 NEK8Q86SG6 692 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 C4orf19Q8IY42 314 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 ADSSL1Q8N142 457 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 RIN2Q8WYP3 895 aaPredicted RBP9.04□□□□□ -0.96
VIM-202ENST00000421459 ZNF707Q96C28 371 aaPredicted RBP9.04□□□□□ -0.96
VIM-202ENST00000421459 FAM20AQ96MK3 541 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 JPH2Q9BR39 696 aaPredicted RBP9.04□□□□□ -0.96
VIM-202ENST00000421459 PAAF1Q9BRP4 392 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 TMEM175Q9BSA9 504 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 HERC2P3Q9BVR0 1158 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 GPR62Q9BZJ7 368 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 IRF2BPLQ9H1B7 796 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 CXCL16Q9H2A7 254 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 NXF3Q9H4D5 531 aaKnown RBP9.04□□□□□ -0.96
VIM-202ENST00000421459 KLK14Q9P0G3 267 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 CA14Q9ULX7 337 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 DUSP12Q9UNI6 340 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 USP20Q9Y2K6 914 aa9.04□□□□□ -0.96
VIM-202ENST00000421459 MYH9P35579 1960 aaKnown RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 TTLL13PA6NNM8 815 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 INO80B-WBP1J3KQ70 363 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 TGM5O43548 720 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 GAS2O43903 313 aaKnown RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 MARCH6O60337 910 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 ERLIN2O94905 339 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 URODP06132 367 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 IGFBP6P24592 240 aaPredicted RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 RFC5P40937 340 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 NUBP1P53384 320 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 FOSBP53539 338 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 PTENP60484 403 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 NTHL1P78549 312 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 MBTD1Q05BQ5 628 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 DSC1Q08554 894 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 CAPSQ13938 189 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 ANGPT1Q15389 498 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 AMHR2Q16671 573 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 SPECC1Q5M775 1068 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 PPP4R3AQ6IN85 833 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 MAEAQ7L5Y9 396 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 CCDC105Q8IYK2 499 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 RNF168Q8IYW5 571 aaPredicted RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 SLC44A3Q8N4M1 653 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 DTWD2Q8NBA8 298 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 GSTCDQ8NEC7 633 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 PIGOQ8TEQ8 1089 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 HASPINQ8TF76 798 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 SMG7Q92540 1137 aaKnown RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 NKD2Q969F2 451 aaPredicted RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 MTRQ99707 1265 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 EIF2AK1Q9BQI3 630 aaKnown RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 RPP25Q9BUL9 199 aaKnown RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 CSRNP2Q9H175 543 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 RXFP1Q9HBX9 757 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 WDR6Q9NNW5 1121 aaKnown RBP9.03□□□□□ -0.96
VIM-202ENST00000421459 PDRG1Q9NUG6 133 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 KANSL3Q9P2N6 904 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 TPCN1Q9ULQ1 816 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 DNAH14Q0VDD8 3507 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 CNTNAP2Q9UHC6 1331 aa9.03□□□□□ -0.96
VIM-202ENST00000421459 LRRN2O75325 713 aa9.02□□□□□ -0.97
VIM-202ENST00000421459 REC8O95072 547 aa9.02□□□□□ -0.97
VIM-202ENST00000421459 NPTXRO95502 500 aa9.02□□□□□ -0.97
VIM-202ENST00000421459 GLUD1P00367 558 aa9.02□□□□□ -0.97
VIM-202ENST00000421459 ADH1AP07327 375 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms