RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 FMO2Q99518 471 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 TMEM8AQ9HCN3 771 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 S100BP04271 92 aaPredicted RBP12.77□□□□□ -0.36
PTPRF-205ENST00000414879 ACTN1P12814 892 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 MSH2P43246 934 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 PDE1BQ01064 536 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 ADCY2Q08462 1091 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 NFIAQ12857 509 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 PTPAQ15257 358 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 AGPAT1Q99943 283 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 INTUQ9ULD6 942 aa12.77□□□□□ -0.36
PTPRF-205ENST00000414879 SH3BP5O60239 455 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 PAMP19021 973 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 INPP5BP32019 993 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 CYP2C19P33261 490 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 DDR1Q08345 913 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 C6orf118Q5T5N4 469 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 PLEKHH3Q7Z736 793 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 MICALL1Q8N3F8 863 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 MKL1Q969V6 931 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 IL17RAQ96F46 866 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 ZBED2Q9BTP6 218 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 TBC1D12O60347 775 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 ZC3H11AO75152 810 aaKnown RBP eCLIP12.77□□□□□ -0.37
PTPRF-205ENST00000414879 CA4P22748 312 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 PPP1R2P1Q96PQ5 205 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 CAPS2Q9BXY5 557 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 KCNQ5Q9NR82 932 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 LRRC37A3O60309 1634 aa12.77□□□□□ -0.37
PTPRF-205ENST00000414879 MSH4O15457 936 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 EVI5O60447 810 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 CELF2O95319 508 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 VIL1P09327 827 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 NMT1P30419 496 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 BIRC2Q13490 618 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 SNRNP35Q16560 246 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 TXNRD3Q86VQ6 643 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 AGBL1Q96MI9 1066 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 ERGIC2Q96RQ1 377 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 GBA2Q9HCG7 927 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 NGRNQ9NPE2 291 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 DBR1Q9UK59 544 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 COL14A1Q05707 1796 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 SYNJ2BP-COX16A0A087WUM0 186 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 CASP1P29466 404 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 SHMT1P34896 483 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 NTRK3Q16288 839 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 DNAAF3Q8N9W5 541 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 LRRC8CQ8TDW0 803 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 COX16Q9P0S2 106 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 A0A087WWV3 80 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 MANSC4A6NHS7 340 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 DYNC1LI2O43237 492 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 PALMO75781 387 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 CLTAP09496 248 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 ACADSBP45954 432 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 NR1I3Q14994 352 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 VEPH1Q14D04 833 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 SLC18A3Q16572 532 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 NAA35Q5VZE5 725 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 C4orf19Q8IY42 314 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 MAGEB5Q9BZ81 275 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 IL25Q9H293 177 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 VCXQ9H320 206 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 ALS2Q96Q42 1657 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 A8MXQ7 604 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 TTI1O43156 1089 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 DSG3P32926 999 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 PLTPP55058 493 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 ARL4CP56559 192 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 PSMC1P62191 440 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 PPATQ06203 517 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 THOC5Q13769 683 aaKnown RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 TMEM132DQ14C87 1099 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 CRY2Q49AN0 593 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 ITPRIPL1Q6GPH6 555 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 CDKL3Q8IVW4 592 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 TUBB6Q9BUF5 446 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 FAM217BQ9NTX9 383 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-205ENST00000414879 AFG3L2Q9Y4W6 797 aa12.76□□□□□ -0.37
PTPRF-205ENST00000414879 IQANK1A0A1B0GTG1 560 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 M0QYV0 167 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 FGGP02679 453 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 FTLP02792 175 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-205ENST00000414879 GARTP22102 1010 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 NAMPTP43490 491 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 DHX34Q14147 1143 aaKnown RBP12.75□□□□□ -0.37
PTPRF-205ENST00000414879 RNF180Q86T96 592 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 TMEM60Q9H2L4 133 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 GPBP1L1Q9HC44 474 aaPredicted RBP12.75□□□□□ -0.37
PTPRF-205ENST00000414879 TMEM51Q9NW97 253 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 HPSEQ9Y251 543 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 NOC2LQ9Y3T9 749 aaKnown RBP12.75□□□□□ -0.37
PTPRF-205ENST00000414879 LMO7Q8WWI1 1683 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 BCL9LQ86UU0 1499 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 EFHC2Q5JST6 749 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 ADAT2Q7Z6V5 191 aaKnown RBP12.75□□□□□ -0.37
PTPRF-205ENST00000414879 CATSPER3Q86XQ3 398 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 SAAL1Q96ER3 474 aa12.75□□□□□ -0.37
PTPRF-205ENST00000414879 RAB3IPQ96QF0 476 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms