RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 CDY2AQ9Y6F7 541 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 STYXL1Q9Y6J8 313 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 CNTNAP2Q9UHC6 1331 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 ANK1P16157 1881 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 A0A1B0GTH6 734 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 TSPAN1O60635 241 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 EXOC3O60645 756 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 CHRNA1P02708 482 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 TFRCP02786 760 aaKnown RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 MTIF2P46199 727 aaKnown RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 GJA8P48165 433 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 MARSP56192 900 aaKnown RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 UBASH3AP57075 661 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 SNRPFP62306 86 aaKnown RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 ZPBP2Q6X784 338 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 SRGAP1Q7Z6B7 1085 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 CBWD2Q8IUF1 395 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 RDH13Q8NBN7 331 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 BORCS6Q96GS4 357 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 CPB2Q96IY4 423 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 GCOM2Q9BZD3 368 aaPredicted RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 SENP6Q9GZR1 1112 aaPredicted RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 VPS16Q9H269 839 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 CGNQ9P2M7 1197 aaKnown RBP10.58□□□□□ -0.72
RIF1-202ENST00000414861 NOD1Q9Y239 953 aa10.58□□□□□ -0.72
RIF1-202ENST00000414861 LRRC10BA6NIK2 292 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 SLC16A3O15427 465 aaKnown RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 TEX33O43247 280 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 TOM1L1O75674 476 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 HARSP12081 509 aaKnown RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 PRKCSHP14314 528 aaPredicted RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 ARF4P18085 180 aaPredicted RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 GARTP22102 1010 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 PROZP22891 400 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 EIF4BP23588 611 aaKnown RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 THPOP40225 353 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 CDK7P50613 346 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 ATN1P54259 1190 aaPredicted RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 MGAT3Q09327 533 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 ATF7IP2Q5U623 682 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 TSHZ1Q6ZSZ6 1077 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 RPAINQ86UA6 219 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 TRIM59Q8IWR1 403 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 FAM186BQ8IYM0 893 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 NME8Q8N427 588 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 XXYLT1Q8NBI6 393 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 CELF4Q9BZC1 486 aaKnown RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 MCOLN1Q9GZU1 580 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 PTPRHQ9HD43 1115 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 PRDM10Q9NQV6 1147 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 TRIP11Q15643 1979 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 A0A0B4J269 797 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 FAM189A1O60320 539 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 ERLIN2O94905 339 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 EPB41P11171 864 aaKnown RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 CRYBB1P53674 252 aaPredicted RBP10.57□□□□□ -0.72
RIF1-202ENST00000414861 PTK7Q13308 1070 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 MYBPC2Q14324 1141 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 SEZ6Q53EL9 994 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 ZBTB33Q86T24 672 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 FAM126BQ8IXS8 530 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 PLEKHO2Q8TD55 490 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 PRIMPOLQ96LW4 560 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 FBXL18Q96ME1 805 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 MKNK1Q9BUB5 465 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 PDZD7Q9H5P4 517 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 FRMD4BQ9Y2L6 1034 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 TRPV2Q9Y5S1 764 aa10.57□□□□□ -0.72
RIF1-202ENST00000414861 CITO14578 2027 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 LGALS16A8MUM7 142 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 GNA14O95837 355 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 HOXA11P31270 313 aaPredicted RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 PSMC2P35998 433 aaKnown RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 CDC42EP1Q00587 391 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 SNRNP35Q16560 246 aaKnown RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 ZNF568Q3ZCX4 644 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 FRMD5Q7Z6J6 570 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 RSPH3Q86UC2 560 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 FAM228AQ86W67 206 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 MRFAP1L1Q96HT8 127 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 PDLIM2Q96JY6 352 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 FAM213AQ9BRX8 229 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 MSTO1Q9BUK6 570 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 NOC4LQ9BVI4 516 aaKnown RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 CDT1Q9H211 546 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 RTN4Q9NQC3 1192 aaKnown RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 ARMCX3Q9UH62 379 aaPredicted RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 AGO2Q9UKV8 859 aaKnown RBP10.56□□□□□ -0.72
RIF1-202ENST00000414861 TNFSF13BQ9Y275 285 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 TET1Q8NFU7 2136 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 N4BP3O15049 544 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 CLDN3O15551 220 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 TRIM49P0CI25 452 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 TRIM49CP0CI26 452 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 COL6A1P12109 1028 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 TNFSF9P41273 254 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 MATR3P43243 847 aaKnown RBP eCLIP10.56□□□□□ -0.72
RIF1-202ENST00000414861 ACOT2P49753 483 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 WNT7BP56706 349 aa10.56□□□□□ -0.72
RIF1-202ENST00000414861 MCL1Q07820 350 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms