RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KCNQ5Q9NR82 932 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 DDX3XO00571 662 aaKnown RBP eCLIP12.76□□□□□ -0.373e-10■■■□□ 17.2
HMGB1-206ENST00000405805 EIF2AK2P19525 551 aaKnown RBP12.76□□□□□ -0.37
HMGB1-206ENST00000405805 COMTP21964 271 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 ALDH3A1P30838 453 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 FMO5P49326 533 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 DYNC1I2Q13409 638 aaKnown RBP12.76□□□□□ -0.37
HMGB1-206ENST00000405805 WDR44Q5JSH3 913 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 TRIM42Q8IWZ5 723 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 LRRC43Q8N309 656 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 C3orf20Q8ND61 904 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 STAMBPL1Q96FJ0 436 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 SMC6Q96SB8 1091 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 NUP85Q9BW27 656 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 CD19P15391 556 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 SMAD1Q15797 465 aaKnown RBP12.76□□□□□ -0.37
HMGB1-206ENST00000405805 PPP4R3CPQ6ZMV5 832 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 ARHGAP22Q7Z5H3 698 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 ERP44Q9BS26 406 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 CNOT8Q9UFF9 292 aaKnown RBP12.76□□□□□ -0.37
HMGB1-206ENST00000405805 PI4K2BG5E9Z4 385 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 HNRNPDLO14979 420 aaKnown RBP12.76□□□□□ -0.37
HMGB1-206ENST00000405805 ANP32DO95626 131 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 SMTNP53814 917 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 APBB1IPQ7Z5R6 666 aaPredicted RBP12.76□□□□□ -0.37
HMGB1-206ENST00000405805 FRMD5Q7Z6J6 570 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 MAP7D3Q8IWC1 876 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 DNAJC19Q96DA6 116 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 ARHGEF26Q96DR7 871 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 MCM8Q9UJA3 840 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 CHMP2BQ9UQN3 213 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 LZTS1Q9Y250 596 aa12.76□□□□□ -0.37
HMGB1-206ENST00000405805 ABCB11O95342 1321 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 TM4SF1P30408 202 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 GIT2Q14161 759 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 C6orf118Q5T5N4 469 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 TMEM154Q6P9G4 183 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PPP1R14CQ8TAE6 165 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 MTMR9Q96QG7 549 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 POP1Q99575 1024 aaKnown RBP12.75□□□□□ -0.37
HMGB1-206ENST00000405805 CNOT10Q9H9A5 744 aaKnown RBP12.75□□□□□ -0.37
HMGB1-206ENST00000405805 NOD2Q9HC29 1040 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 ARHGEF10LQ9HCE6 1279 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 DDX4Q9NQI0 724 aaKnown RBP12.75□□□□□ -0.37
HMGB1-206ENST00000405805 GDF3Q9NR23 364 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PARP2Q9UGN5 583 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 DCTN4Q9UJW0 460 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 MYH8P13535 1937 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 DNAJC6O75061 913 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 RPS6KA5O75582 802 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 MSH2P43246 934 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 SCTRP47872 440 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PPP4CP60510 307 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PRKG1Q13976 671 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PPP4R3AQ6IN85 833 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PPP1R18Q6NYC8 613 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 ZFPM1Q8IX07 1006 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 CTAGE3PQ8IX95 158 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 TMCO5AQ8N6Q1 288 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 INPP4AQ96PE3 977 aaPredicted RBP12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PI4K2AQ9BTU6 479 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 KIFC3Q9BVG8 833 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 SLITRK6Q9H5Y7 841 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 ANKFY1Q9P2R3 1169 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PCDHAC2Q9Y5I4 1007 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 ATP2A1O14983 1001 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 SUPT3HO75486 399 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 NOL4O94818 638 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 RAD23BP54727 409 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 EIF3BP55884 814 aaKnown RBP12.75□□□□□ -0.37
HMGB1-206ENST00000405805 GPC5P78333 572 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 AOC3Q16853 763 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 CDC42EP5Q6NZY7 148 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 RNF207Q6ZRF8 634 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 ZNF564Q8TBZ8 553 aaPredicted RBP12.75□□□□□ -0.37
HMGB1-206ENST00000405805 KRT35Q92764 455 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 NACC1Q96RE7 527 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 TEKT3Q9BXF9 490 aa12.75□□□□□ -0.37
HMGB1-206ENST00000405805 PARP4Q9UKK3 1724 aaKnown RBP12.74□□□□□ -0.37
HMGB1-206ENST00000405805 PDXKO00764 312 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 C21orf2O43822 256 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 PYGLP06737 847 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 MARCKSL1P49006 195 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 CCDC17Q96LX7 622 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 PITPNM3Q9BZ71 974 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 ETNK1Q9HBU6 452 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 USP20Q9Y2K6 914 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 GOLGA8RI6L899 631 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 DNAJC8O75937 253 aaPredicted RBP12.74□□□□□ -0.37
HMGB1-206ENST00000405805 FOSP01100 380 aaPredicted RBP12.74□□□□□ -0.37
HMGB1-206ENST00000405805 NPR1P16066 1061 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 CA4P22748 312 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 SERPINB4P48594 390 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 DDR1Q08345 913 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 EAPPQ56P03 285 aaPredicted RBP12.74□□□□□ -0.37
HMGB1-206ENST00000405805 PADI6Q6TGC4 694 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 KAT5Q92993 513 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 ECT2Q9H8V3 914 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 CCPG1Q9ULG6 757 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 TMA7Q9Y2S6 64 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms