RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 MAP2K1Q02750 393 aaPredicted RBP12.76□□□□□ -0.37
SKA3-203ENST00000400018 VWA3BQ502W6 1294 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 MAP3K21Q5TCX8 1036 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 TMX1Q9H3N1 280 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 ARMCX3Q9UH62 379 aaPredicted RBP12.76□□□□□ -0.37
SKA3-203ENST00000400018 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.76□□□□□ -0.37
SKA3-203ENST00000400018 SLC26A4O43511 780 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 HOXD10P28358 340 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 RFC5P40937 340 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 NAMPTP43490 491 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 GPC3P51654 580 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 MBTD1Q05BQ5 628 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 C1orf220Q5T0J3 134 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 IER5Q5VY09 327 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 RABGGTAQ92696 567 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 HMX1Q9NP08 348 aaPredicted RBP12.76□□□□□ -0.37
SKA3-203ENST00000400018 ACP6Q9NPH0 428 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 TRMT1Q9NXH9 659 aaKnown RBP12.76□□□□□ -0.37
SKA3-203ENST00000400018 SEL1LQ9UBV2 794 aa12.76□□□□□ -0.37
SKA3-203ENST00000400018 TTC26A0AVF1 554 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 EIF3DO15371 548 aaKnown RBP eCLIP12.75□□□□□ -0.37
SKA3-203ENST00000400018 PLEKP08567 350 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 HOXD8P13378 290 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 NFX1Q12986 1120 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 STRN3Q13033 797 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 KAT5Q92993 513 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 SLC35C1Q96A29 364 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 NTPCRQ9BSD7 190 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 DESI2Q9BSY9 194 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 EIF2AQ9BY44 585 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 PTPN22Q9Y2R2 807 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 PRUNE2Q8WUY3 3088 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 LOC102724159A0A0B4J2E5 919 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 C17orf102A2RUQ5 167 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 USP27XA6NNY8 438 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 LGALS16A8MUM7 142 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 MEFVO15553 781 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 ARF4P18085 180 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 ACLYP53396 1101 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 PWP2Q15269 919 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 SNRNP35Q16560 246 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 ZNF484Q5JVG2 852 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 CRELD2Q6UXH1 353 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 TRIM59Q8IWR1 403 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 KLK14Q9P0G3 267 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 HAS3O00219 553 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 SKILP12757 684 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 IGFBP6P24592 240 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 SSTR3P32745 418 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 AFF1P51825 1210 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 COBLL1Q53SF7 1204 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 GLRA4Q5JXX5 417 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 SPECC1LQ69YQ0 1117 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 SPOPLQ6IQ16 392 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 CCSAPQ6IQ19 270 aaPredicted RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 RRAGAQ7L523 313 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 LINC01465Q8N7H1 131 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 RETREG2Q8NC44 543 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 MSTO1Q9BUK6 570 aa12.75□□□□□ -0.37
SKA3-203ENST00000400018 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.75□□□□□ -0.37
SKA3-203ENST00000400018 CGNQ9P2M7 1197 aaKnown RBP12.75□□□□□ -0.37
SKA3-203ENST00000400018 THSD7BQ9C0I4 1608 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 UMODL1Q5DID0 1318 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 GPR32O75388 356 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 HSPA1AP0DMV8 641 aaKnown RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 HSPA1BP0DMV9 641 aaKnown RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 AKAP5P24588 427 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 THPOP40225 353 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 PBX1P40424 430 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 DNM2P50570 870 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 IRF5Q13568 498 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 ITGA7Q13683 1181 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 SPIRE2Q8WWL2 714 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 TSC1Q92574 1164 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 ZNF516Q92618 1163 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 BORCS6Q96GS4 357 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 CHP1Q99653 195 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 LSM14BQ9BX40 385 aaKnown RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 CCDC113Q9H0I3 377 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 DMAC2Q9NW81 257 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 SOWAHDA6NJG2 315 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 EPB41P11171 864 aaKnown RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 SLC26A2P50443 739 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 PTENP60484 403 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 ADAM17P78536 824 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 PRPF4BQ13523 1007 aaKnown RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 MAPK6Q16659 721 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 MAN2A1Q16706 1144 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 TC2NQ8N9U0 490 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 XXYLT1Q8NBI6 393 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 KLHDC9Q8NEP7 349 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 OR5B17Q8NGF7 314 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 MTG1Q9BT17 334 aaPredicted RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 CFHR5Q9BXR6 569 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 SENP6Q9GZR1 1112 aaPredicted RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 RNF39Q9H2S5 420 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 SPC25Q9HBM1 224 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 AGO2Q9UKV8 859 aaKnown RBP12.74□□□□□ -0.37
SKA3-203ENST00000400018 FRMD4BQ9Y2L6 1034 aa12.74□□□□□ -0.37
SKA3-203ENST00000400018 NRCAMQ92823 1304 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms