RNA–Protein interactions for RNA: ENST00000397611.7

PTPRD-205, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,242 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-205ENST00000397611 RASGRF2O14827 1237 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 ECHS1P30084 290 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 GIT2Q14161 759 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 ZNF268Q14587 947 aaPredicted RBP5.84□□□□□ -1.48
PTPRD-205ENST00000397611 NFIXQ14938 502 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 CYB5D1Q6P9G0 228 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.84□□□□□ -1.48
PTPRD-205ENST00000397611 NUF2Q9BZD4 464 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 PI4KBQ9UBF8 816 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 SALL4Q9UJQ4 1053 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 STXBP5LQ9Y2K9 1186 aa5.84□□□□□ -1.48
PTPRD-205ENST00000397611 HNRNPCL1O60812 293 aaKnown RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 DKC1O60832 514 aaKnown RBP eCLIP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PLEKP08567 350 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 KRT5P13647 590 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 HSD17B3P37058 310 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ITIH4Q14624 930 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 LRRC14Q15048 493 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PRR5LQ6MZQ0 368 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 FAM47EQ6ZV65 393 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 RIBC1Q8N443 379 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 BORCS6Q96GS4 357 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 VCPKMTQ9H867 229 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PARVGQ9HBI0 331 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CCNL1Q9UK58 526 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 DDX3XO00571 662 aaKnown RBP eCLIP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 MYBL1P10243 752 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SOX5P35711 763 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PDCD2Q16342 344 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 TTMPQ5BVD1 217 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SLC27A3Q5K4L6 730 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 KIFAP3Q92845 792 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ZDHHC15Q96MV8 337 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ZNF711Q9Y462 761 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SMIM22K7EJ46 135 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 RAD51CO43502 376 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 AKAP3O75969 853 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SLC8A3P57103 927 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CRYMQ14894 314 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 KIAA1755Q5JYT7 1200 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SLFN13Q68D06 897 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ZNF571Q7Z3V5 609 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 NLGN1Q8N2Q7 840 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SLC44A5Q8NCS7 719 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 TTC16Q8NEE8 873 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SHC3Q92529 594 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CYFIP2Q96F07 1278 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 XPO6Q96QU8 1125 aaKnown RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 STRA6Q9BX79 667 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 KDM4CQ9H3R0 1056 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 NOD2Q9HC29 1040 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SLC37A4O43826 429 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 AP1G2O75843 785 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 AKR1B1P15121 316 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 GALCP54803 685 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 TMEM154Q6P9G4 183 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PAF1Q8N7H5 531 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 OR2W6PQ8NHA6 318 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 TBC1D16Q8TBP0 767 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 TMC2Q8TDI7 906 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CHURC1Q8WUH1 139 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 NSMCE1Q8WV22 266 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ATXN2LQ8WWM7 1075 aaKnown RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 RNPC3Q96LT9 517 aaKnown RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 USP40Q9NVE5 1235 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SMARCAL1Q9NZC9 954 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 USP17L5A8MUK1 530 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CDH16O75309 829 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 UFL1O94874 794 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SHMT1P34896 483 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PIP4K2CQ8TBX8 421 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 RHBDL2Q9NX52 303 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CTNNAL1Q9UBT7 734 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ANGPTL2Q9UKU9 493 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 POC1B-GALNT4F8VUJ3 575 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 GNPATO15228 680 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CCDC92Q53HC0 331 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 NME8Q8N427 588 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CASKIN2Q8WXE0 1202 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 VCPIP1Q96JH7 1222 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 LBHD1Q9BQE6 289 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ETNK1Q9HBU6 452 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 TFCP2L1Q9NZI6 479 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 SPATA31A6Q5VVP1 1343 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 PASKQ96RG2 1323 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 MEIS1O00470 390 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ABLIM1O14639 778 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 KRT14P02533 472 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ATF2P15336 505 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 FMO5P49326 533 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CTCFP49711 727 aaPredicted RBP5.83□□□□□ -1.48
PTPRD-205ENST00000397611 GCNT1Q02742 428 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 RASA3Q14644 834 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CEP55Q53EZ4 464 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 ARHGEF18Q6ZSZ5 1173 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 FAM160B2Q86V87 743 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 KIF2BQ8N4N8 673 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 METTL13Q8N6R0 699 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 FAM133AQ8N9E0 248 aa5.83□□□□□ -1.48
PTPRD-205ENST00000397611 CXorf38Q8TB03 319 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms