RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 BTBD18B2RXH4 712 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 F8W810 466 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 GOLGA6L22H0YM25 854 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 LILRB3O75022 631 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 SSBP05455 408 aaKnown RBP eCLIP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 P4HBP07237 508 aaKnown RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 U2AF2P26368 475 aaKnown RBP eCLIP11.5□□□□□ -0.571e-6■□□□□ 10.9
NEDD8-202ENST00000396828 AVPR2P30518 371 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 YWHABP31946 246 aaKnown RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 POLGP54098 1239 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 EPHA7Q15375 998 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 PTPN14Q15678 1187 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 ATL3Q6DD88 541 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 NCAPH2Q6IBW4 605 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 TMC5Q6UXY8 1006 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 CLEC17AQ6ZS10 378 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 NOSTRINQ8IVI9 506 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 SUGP1Q8IWZ8 645 aaKnown RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 SMG8Q8ND04 991 aaKnown RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 TNFRSF25Q93038 417 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 FAM20AQ96MK3 541 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 ZNF396Q96N95 335 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 EIF2AQ9BY44 585 aaKnown RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 INO80BQ9C086 356 aaPredicted RBP11.5□□□□□ -0.57
NEDD8-202ENST00000396828 XPNPEP1Q9NQW7 623 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 MIOSQ9NXC5 875 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 IRAK3Q9Y616 596 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 C2orf16Q68DN1 1984 aa11.5□□□□□ -0.57
NEDD8-202ENST00000396828 DENND4AQ7Z401 1863 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 SLITRK3O94933 977 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 BAG4O95429 457 aaKnown RBP11.49□□□□□ -0.57
NEDD8-202ENST00000396828 CNPP09543 421 aaKnown RBP11.49□□□□□ -0.57
NEDD8-202ENST00000396828 MYBP10242 640 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 NCLP19338 710 aaKnown RBP11.49□□□□□ -0.57
NEDD8-202ENST00000396828 KRT85P78386 507 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 RNASELQ05823 741 aaKnown RBP11.49□□□□□ -0.57
NEDD8-202ENST00000396828 ITIH3Q06033 890 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 EMC2Q15006 297 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 FOXD4L6Q3SYB3 417 aaPredicted RBP11.49□□□□□ -0.57
NEDD8-202ENST00000396828 TPRNQ4KMQ1 711 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 XKR9Q5GH70 373 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 CES5AQ6NT32 575 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 FOXD4L3Q6VB84 417 aaPredicted RBP11.49□□□□□ -0.57
NEDD8-202ENST00000396828 TPH2Q8IWU9 490 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 C4orf19Q8IY42 314 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 RNF149Q8NC42 400 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 SLC7A3Q8WY07 619 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 CPB2Q96IY4 423 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 RIPOR3Q96MK2 946 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 KLHL5Q96PQ7 755 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 RSAD1Q9HA92 442 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 MARCH5Q9NX47 278 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 LIMD1Q9UGP4 676 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 CFAP45Q9UL16 551 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 HES2Q9Y543 173 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 PLXNA3P51805 1871 aa11.49□□□□□ -0.57
NEDD8-202ENST00000396828 DCHS1Q96JQ0 3298 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 NRP1O14786 923 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 TSPAN1O60635 241 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 SKIP12755 728 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 RAB27AP51159 221 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 RILPL1Q5EBL4 403 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 KIAA1841Q6NSI8 718 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 SRGAP1Q7Z6B7 1085 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 ZBTB33Q86T24 672 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 CDR2LQ86X02 465 aaPredicted RBP11.48□□□□□ -0.57
NEDD8-202ENST00000396828 ASAP3Q8TDY4 903 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 PSPC1Q8WXF1 523 aaKnown RBP11.48□□□□□ -0.57
NEDD8-202ENST00000396828 PGBD4Q96DM1 585 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 ZFP42Q96MM3 310 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 NECTIN4Q96NY8 510 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 JPH2Q9BR39 696 aaPredicted RBP11.48□□□□□ -0.57
NEDD8-202ENST00000396828 NOL7Q9UMY1 257 aaKnown RBP11.48□□□□□ -0.57
NEDD8-202ENST00000396828 SORCS3Q9UPU3 1222 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 PRG3Q9Y2Y8 225 aaPredicted RBP11.48□□□□□ -0.57
NEDD8-202ENST00000396828 NR2E1Q9Y466 385 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 IPPQ9Y573 584 aa11.48□□□□□ -0.57
NEDD8-202ENST00000396828 ARL5CA6NH57 179 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 H0Y858 1186 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 C2CD2LO14523 706 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 TBX3O15119 743 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 EFEMP2O95967 443 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 ALDH2P05091 517 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 GCFC2P16383 781 aaKnown RBP11.47□□□□□ -0.57
NEDD8-202ENST00000396828 PTMSP20962 102 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 RFC5P40937 340 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 MTHFRP42898 656 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 CLCN4P51793 760 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 PTPN5P54829 565 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 PTENP60484 403 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 DNM1Q05193 864 aaKnown RBP11.47□□□□□ -0.57
NEDD8-202ENST00000396828 AMHR2Q16671 573 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 ATAT1Q5SQI0 421 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 COLGALT2Q8IYK4 626 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 TMEM105Q8N8V8 129 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 RABGGTAQ92696 567 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 B3GALT6Q96L58 329 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 GAD1Q99259 594 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 HSD17B14Q9BPX1 270 aa11.47□□□□□ -0.57
NEDD8-202ENST00000396828 EIF2AK1Q9BQI3 630 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms