RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 GAS7O60861 476 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 FAM13AO94988 1023 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 FGGP02679 453 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 NCALDP61601 193 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 MIS18BP1Q6P0N0 1132 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 EIF1ADQ8N9N8 165 aaKnown RBP19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 SLC35C1Q96A29 364 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 TYW1Q9NV66 732 aaKnown RBP19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 RGS16O15492 202 aaPredicted RBP19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 KRT16P08779 473 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 LRRC57Q8N9N7 239 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 SH2D3AQ9BRG2 576 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 SMNDC1O75940 238 aaKnown RBP eCLIP19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 RARAP10276 462 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 ZNF268Q14587 947 aaPredicted RBP19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 CEP55Q53EZ4 464 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 TRIM68Q6AZZ1 485 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 LDHDQ86WU2 507 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 KLHL29Q96CT2 875 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 GMLQ99445 158 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 ZNF577Q9BSK1 485 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 UNC45AQ9H3U1 944 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 SNX24Q9Y343 169 aa19.05■□□□□ 0.64
SQSTM1-202ENST00000389805 ASAP2O43150 1006 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 EVI5O60447 810 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 GSTA1P08263 222 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 EPHA7Q15375 998 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 ALKBH5Q6P6C2 394 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 HOOK3Q86VS8 718 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 TPCN2Q8NHX9 752 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 RNF25Q96BH1 459 aaPredicted RBP19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 RANBP17Q9H2T7 1088 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 PNMA3Q9UL41 463 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 BCS1LQ9Y276 419 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 RIPK1Q13546 671 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 SLC29A2Q14542 456 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 ITIH4Q14624 930 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 ATP8B4Q8TF62 1192 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 SLC5A5Q92911 643 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 CALR3Q96L12 384 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 EPB41L4BQ9H329 900 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 DBR1Q9UK59 544 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 ZMYM2Q9UBW7 1377 aa19.04■□□□□ 0.64
SQSTM1-202ENST00000389805 AP1ARQ63HQ0 302 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 RDH13Q8NBN7 331 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 SUPT20HQ8NEM7 779 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 EPS8L3Q8TE67 593 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 CHURC1Q8WUH1 139 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 SLC5A4Q9NY91 659 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 GCNT4Q9P109 453 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 CFAP73A6NFT4 308 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 VIL1P09327 827 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 DENND2CQ68D51 928 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 CENPTQ96BT3 561 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 SIX2Q9NPC8 291 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 FAM114A2Q9NRY5 505 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 COL4A5P29400 1685 aa19.03■□□□□ 0.64
SQSTM1-202ENST00000389805 CCDC188H7C350 402 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 PPFIA2O75334 1257 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 MMP13P45452 471 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 CYP2J2P51589 502 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 PRELPP51888 382 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 PMS2P54278 862 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 PPP2R5CQ13362 524 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 ZNF211Q13398 564 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 SNX1Q13596 522 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 BMT2Q1RMZ1 405 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 SPDYE2Q495Y8 402 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 ARHGAP27Q6ZUM4 889 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 OTUD6AQ7L8S5 288 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 CEP120Q8N960 986 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 FIZ1Q96SL8 496 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 FGFR1OP2Q9NVK5 253 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 COL20A1Q9P218 1284 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 NAGPAQ9UK23 515 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 RPL13P26373 211 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 CPXCR1Q8N123 301 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 CCHCR1Q8TD31 782 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 DYDC1Q8WWB3 177 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 PARVGQ9HBI0 331 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 OLFML3Q9NRN5 406 aa19.02■□□□□ 0.64
SQSTM1-202ENST00000389805 BHMG1C9JSJ3 638 aaPredicted RBP19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 ITGB5P18084 799 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 ABL2P42684 1182 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 ANKRD20A2Q5SQ80 823 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 ANKRD20A1Q5TYW2 823 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 ANKRD20A3Q5VUR7 823 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 TTLL6Q8N841 843 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 IL31RAQ8NI17 732 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 FBXO25Q8TCJ0 367 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 SLITRK6Q9H5Y7 841 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 TUFT1Q9NNX1 390 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 HOMER2Q9NSB8 354 aa19.02■□□□□ 0.63
SQSTM1-202ENST00000389805 TULP1O00294 542 aaPredicted RBP19.01■□□□□ 0.63
SQSTM1-202ENST00000389805 IPO5O00410 1097 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-202ENST00000389805 NFIBO00712 420 aa19.01■□□□□ 0.63
SQSTM1-202ENST00000389805 CAP2P40123 477 aa19.01■□□□□ 0.63
SQSTM1-202ENST00000389805 EIF3BP55884 814 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-202ENST00000389805 MAP2K1Q02750 393 aaPredicted RBP19.01■□□□□ 0.63
SQSTM1-202ENST00000389805 ODR4Q5SWX8 454 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms