RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 LRMPQ12912 555 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 BFSP1Q12934 665 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 SNRNP35Q16560 246 aaKnown RBP20.3■□□□□ 0.84
CLN3-206ENST00000360019 TCERG1LQ5VWI1 586 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 RNF180Q86T96 592 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 LRRC8AQ8IWT6 810 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 PCSK9Q8NBP7 692 aaKnown RBP20.3■□□□□ 0.84
CLN3-206ENST00000360019 ACO2Q99798 780 aaKnown RBP20.3■□□□□ 0.84
CLN3-206ENST00000360019 ANKFY1Q9P2R3 1169 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 SIK3Q9Y2K2 1263 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-206ENST00000360019 GNAT1P11488 350 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 RBL2Q08999 1139 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 AMHR2Q16671 573 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 KIZQ2M2Z5 673 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 INTS8Q75QN2 995 aaKnown RBP20.3■□□□□ 0.84
CLN3-206ENST00000360019 ZNF410Q86VK4 478 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 GPD1LQ8N335 351 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 DNAJB3Q8WWF6 145 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 ADAMTS10Q9H324 1103 aa20.3■□□□□ 0.84
CLN3-206ENST00000360019 GRIN2DO15399 1336 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 A0A0B4J269 797 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 GPR32O75388 356 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 KCNMA1Q12791 1236 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 SLFN12LQ6IEE8 588 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 GDF6Q6KF10 455 aaPredicted RBP20.29■□□□□ 0.84
CLN3-206ENST00000360019 CCDC150Q8NCX0 1101 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 PLEKHO2Q8TD55 490 aa20.29■□□□□ 0.84
CLN3-206ENST00000360019 PRMT7Q9NVM4 692 aaPredicted RBP20.29■□□□□ 0.84
CLN3-206ENST00000360019 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-206ENST00000360019 ABLIM1O14639 778 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 TOM1L1O75674 476 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 TRIM49P0CI25 452 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 TRIM49CP0CI26 452 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 FXR1P51114 621 aaKnown RBP eCLIP20.28■□□□□ 0.84
CLN3-206ENST00000360019 DLG4P78352 724 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 PRPF4BQ13523 1007 aaKnown RBP20.28■□□□□ 0.84
CLN3-206ENST00000360019 FAM187BQ17R55 369 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 TC2NQ8N9U0 490 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 SCLT1Q96NL6 688 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 FAM213AQ9BRX8 229 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 TTYH3Q9C0H2 523 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 AGO2Q9UKV8 859 aaKnown RBP20.28■□□□□ 0.84
CLN3-206ENST00000360019 FRMPD3Q5JV73 1810 aa20.28■□□□□ 0.84
CLN3-206ENST00000360019 RNF225M0QZC1 329 aaPredicted RBP20.27■□□□□ 0.84
CLN3-206ENST00000360019 EXTL3O43909 919 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 KRT13P13646 458 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 PROZP22891 400 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 SFPQP23246 707 aaKnown RBP eCLIP20.27■□□□□ 0.84
CLN3-206ENST00000360019 CASP14P31944 242 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 ACLYP53396 1101 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 ADKP55263 362 aaKnown RBP20.27■□□□□ 0.84
CLN3-206ENST00000360019 MCCD1P59942 119 aaPredicted RBP20.27■□□□□ 0.84
CLN3-206ENST00000360019 C1orf220Q5T0J3 134 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 TSHZ1Q6ZSZ6 1077 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 SESTD1Q86VW0 696 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 PPFIBP1Q86W92 1011 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 CPLX3Q8WVH0 158 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 MSTO1Q9BUK6 570 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.27■□□□□ 0.84
CLN3-206ENST00000360019 PTPRHQ9HD43 1115 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.27■□□□□ 0.84
CLN3-206ENST00000360019 KIAA0391O15091 583 aaKnown RBP20.27■□□□□ 0.84
CLN3-206ENST00000360019 CLDN3O15551 220 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 VAMP7P51809 220 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 CDC42EP1Q00587 391 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 TRIM14Q14142 442 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 FAM47CQ5HY64 1035 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 ATF7IP2Q5U623 682 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 CRELD2Q6UXH1 353 aaPredicted RBP20.27■□□□□ 0.84
CLN3-206ENST00000360019 SRGAP1Q7Z6B7 1085 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 MFSD14AQ96MC6 490 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 UNC93B1Q9H1C4 597 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 CDHR5Q9HBB8 845 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 GINS2Q9Y248 185 aa20.27■□□□□ 0.84
CLN3-206ENST00000360019 CNTNAP2Q9UHC6 1331 aa20.26■□□□□ 0.83
CLN3-206ENST00000360019 FAM189A1O60320 539 aa20.26■□□□□ 0.83
CLN3-206ENST00000360019 MATR3P43243 847 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-206ENST00000360019 ZBTB41Q5SVQ8 909 aa20.26■□□□□ 0.83
CLN3-206ENST00000360019 PRIMPOLQ96LW4 560 aa20.26■□□□□ 0.83
CLN3-206ENST00000360019 PCMTD1Q96MG8 357 aaPredicted RBP20.26■□□□□ 0.83
CLN3-206ENST00000360019 OSMRQ99650 979 aa20.26■□□□□ 0.83
CLN3-206ENST00000360019 CRACR2AQ9BSW2 395 aa20.26■□□□□ 0.83
CLN3-206ENST00000360019 TTC26A0AVF1 554 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 MOXD2PA6NHM9 499 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 AKR1B15C9JRZ8 316 aaPredicted RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 EPHB6O15197 1021 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 MFAP3LO75121 409 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 FMO5P49326 533 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 ACOT2P49753 483 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 MCL1Q07820 350 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CYP24A1Q07973 514 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CBWD6Q4V339 395 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CBWD3Q5JTY5 395 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CBWD5Q5RIA9 395 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 EEF1DP3Q658K8 133 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 TAF2Q6P1X5 1199 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 ZBTB33Q86T24 672 aa20.25■□□□□ 0.83
CLN3-206ENST00000360019 CDR2LQ86X02 465 aaPredicted RBP20.25■□□□□ 0.83
CLN3-206ENST00000360019 TCHPQ9BT92 498 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms