RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SOX10P56693 466 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 RHOT2Q8IXI1 618 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 PARD3BQ8TEW8 1205 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 SPIRE2Q8WWL2 714 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 CEP170P1Q96L14 293 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 WRNIP1Q96S55 665 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 SLITRK6Q9H5Y7 841 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.5■■□□□ 1.191e-9■■■■■ 43.3
CCDC88B-203ENST00000359902 PICK1Q9NRD5 415 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 RLFQ13129 1914 aa22.5■■□□□ 1.19
CCDC88B-203ENST00000359902 FGGP02679 453 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 CHRNB2P17787 502 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 USP8P40818 1118 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 OAZ1P54368 228 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 HMGCS2P54868 508 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 PRAMEF18Q5VWM3 479 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 NSUN6Q8TEA1 469 aaKnown RBP22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 KIFAP3Q92845 792 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 CCDC127Q96BQ5 260 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 AMACRQ9UHK6 382 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 FZD1Q9UP38 647 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 TELO2Q9Y4R8 837 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 ZNF233A6NK53 670 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 SHOX2O60902 331 aaPredicted RBP22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 TCEAL1Q15170 157 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 SLC39A4Q6P5W5 647 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 DDX42Q86XP3 938 aaKnown RBP eCLIP22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 C12orf42Q96LP6 360 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 PCDHB18PQ96TA0 734 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 POP1Q99575 1024 aaKnown RBP22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 NOCTQ9UK39 431 aaKnown RBP22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 PFASO15067 1338 aa22.49■■□□□ 1.19
CCDC88B-203ENST00000359902 KRT14P02533 472 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 HSPA9P38646 679 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 HLTFQ14527 1009 aaKnown RBP eCLIP22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 TMEM132BQ14DG7 1078 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 KRT39Q6A163 491 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 SWSAP1Q6NVH7 229 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 NOP9Q86U38 636 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 EPS8L1Q8TE68 723 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 CARD9Q9H257 536 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 C17orf75Q9HAS0 396 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 CWC15Q9P013 229 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 COQ4Q9Y3A0 265 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 COL11A1P12107 1806 aaPredicted RBP22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 RTN2O75298 545 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 IVLP07476 585 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 PPM1KQ8N3J5 372 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 ATP6V0A1Q93050 837 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 FBXL18Q96ME1 805 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 PDLIM7Q9NR12 457 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 NR2E1Q9Y466 385 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 ALG6Q9Y672 507 aa22.48■■□□□ 1.19
CCDC88B-203ENST00000359902 CYP26A1O43174 497 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 GPC5P78333 572 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 MAATS1Q7Z4T9 603 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 CD302Q8IX05 232 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 CCDC26Q8TAB7 109 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 SHC3Q92529 594 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 RNPC3Q96LT9 517 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 MFSD14AQ96MC6 490 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 TMEM8AQ9HCN3 771 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 CTTNBP2NLQ9P2B4 639 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 WDR81Q562E7 1941 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 FZD9O00144 591 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 TULP1O00294 542 aaPredicted RBP22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 MFAP3P55082 362 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 POU5F1Q01860 360 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 FOXR1Q6PIV2 292 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 TMC2Q8TDI7 906 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 ALG3Q92685 438 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 ACP6Q9NPH0 428 aa22.47■■□□□ 1.19
CCDC88B-203ENST00000359902 ADGRA3Q8IWK6 1321 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 BRCA1P38398 1863 aaKnown RBP22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 PSAPP07602 524 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 GPC3P51654 580 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 C11orf63Q6NUN7 778 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 SLC47A2Q86VL8 602 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 HELQQ8TDG4 1101 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 NEUROG2Q9H2A3 272 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 CYP39A1Q9NYL5 469 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 KIAA1217Q5T5P2 1943 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 C19orf81C9J6K1 198 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 TTI1O43156 1089 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 DKC1O60832 514 aaKnown RBP eCLIP22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 GZMAP12544 262 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 PRPF4BQ13523 1007 aaKnown RBP22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 SEC14L1Q92503 715 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 JPH1Q9HDC5 661 aaPredicted RBP22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 XPNPEP1Q9NQW7 623 aa22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 TOPORSQ9NS56 1045 aaPredicted RBP22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 PPP1R1BQ9UD71 204 aaPredicted RBP22.46■■□□□ 1.19
CCDC88B-203ENST00000359902 PHIPQ8WWQ0 1821 aa22.45■■□□□ 1.19
CCDC88B-203ENST00000359902 NFASCO94856 1347 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 ATP2A1O14983 1001 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 KCTD19Q17RG1 926 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 CCDC60Q8IWA6 550 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 TAS1R2Q8TE23 839 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 POMGNT1Q8WZA1 660 aa22.45■■□□□ 1.18
CCDC88B-203ENST00000359902 CELF4Q9BZC1 486 aaKnown RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms