RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 TSSK1BQ9BXA7 367 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CIDEBQ9UHD4 219 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SERPING1P05155 500 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 TRMT5Q32P41 509 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 LAYNQ6UX15 382 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SETD3Q86TU7 594 aaPredicted RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 GALNT4Q8N4A0 578 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SHCBP1Q8NEM2 672 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 VTI1AQ96AJ9 217 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 FAM129BQ96TA1 746 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PCDHA13Q9Y5I0 950 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 KIF1AQ12756 1690 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SNX2O60749 519 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 KLHL2O95198 593 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 FCGR1AP12314 374 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SCTRP47872 440 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 THOC5Q13769 683 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 KLHL24Q6TFL4 600 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 USHBP1Q8N6Y0 703 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 TTC8Q8TAM2 541 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CHID1Q9BWS9 393 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 KRCC1Q9NPI7 259 aaPredicted RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 COPG2Q9UBF2 871 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PCDHB15Q9Y5E8 787 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PPP2R3BQ9Y5P8 575 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 KDRP35968 1356 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PTPROQ16827 1216 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 C12orf60Q5U649 245 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PMF1Q6P1K2 205 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PRPF39Q86UA1 669 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 HPS1Q92902 700 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 OSBPL10Q9BXB5 764 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 GTSE1Q9NYZ3 720 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CARMIL3Q8ND23 1372 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 BLMP54132 1417 aaPredicted RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 LAD1O00515 517 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 APOL1O14791 398 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 BACH1O14867 736 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 POTEIP0CG38 1075 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PURAQ00577 322 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 RBL2Q08999 1139 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 RRS1Q15050 365 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 ABRAXAS1Q6UWZ7 409 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 KIAA0408Q6ZU52 694 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SH3KBP1Q96B97 665 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 ALKBH8Q96BT7 664 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 DHTKD1Q96HY7 919 aaPredicted RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 CNPY3Q9BT09 278 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 MND1Q9BWT6 205 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 ST7Q9NRC1 585 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 SYNJ2O15056 1496 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 ABCA4P78363 2273 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 PKDREJQ9NTG1 2253 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 OCLNQ16625 522 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 NAA35Q5VZE5 725 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 ZNF786Q8N393 782 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CCDC33Q8N5R6 958 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 UHMK1Q8TAS1 419 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 ANKRD7Q92527 254 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CNOT6LQ96LI5 555 aaKnown RBP6.51□□□□□ -1.37
VCAN-203ENST00000343200 CDY2AQ9Y6F7 541 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CDY1Q9Y6F8 540 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 ABCC2Q92887 1545 aa6.51□□□□□ -1.37
VCAN-203ENST00000343200 CYP19A1P11511 503 aaPredicted RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 CCDC60Q8IWA6 550 aaPredicted RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 INPP5DQ92835 1189 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 MIEF2Q96C03 454 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 ATXN10Q9UBB4 475 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 FBXO9Q9UK97 447 aaPredicted RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 SUGT1Q9Y2Z0 365 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 FGD5Q6ZNL6 1462 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 ARHGEF33A8MVX0 844 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 GSPT1P15170 499 aaKnown RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 MXI1P50539 228 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 DARS2Q6PI48 645 aaKnown RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 UNC45BQ8IWX7 931 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 FAM213AQ9BRX8 229 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 THTPAQ9BU02 230 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 HDHD2Q9H0R4 259 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 HERC5Q9UII4 1024 aaKnown RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 ING4Q9UNL4 249 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 PCDHB13Q9Y5F0 798 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 MAGEB6P1A0A0J9YX57 407 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 A0A1W2PQ27 194 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 A0A1W2PQ64 194 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 A0A1W2PQD8 194 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 NDUFA8P51970 172 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 PLS1Q14651 629 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 LRIG3Q6UXM1 1119 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 PIK3AP1Q6ZUJ8 805 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 ZNF554Q86TJ5 538 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 TXNDC2Q86VQ3 553 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 ANKLE2Q86XL3 938 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 SLFN12Q8IYM2 578 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 WDR12Q9GZL7 423 aaKnown RBP6.5□□□□□ -1.37
VCAN-203ENST00000343200 EHD3Q9NZN3 535 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 APPL1Q9UKG1 709 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 HPCAL4Q9UM19 191 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 MAPRE3Q9UPY8 281 aa6.5□□□□□ -1.37
VCAN-203ENST00000343200 BTBD3Q9Y2F9 522 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms