RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 KIAA1024Q9UPX6 916 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 PCDHB5Q9Y5E4 795 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 ADAMTS13Q76LX8 1427 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 KHNYNO15037 678 aaKnown RBP9.02□□□□□ -0.97
HMGB1-203ENST00000341423 DCXO43602 365 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 DGAT1O75907 488 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 BAIAP3O94812 1187 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 RB1P06400 928 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 FSHRP23945 695 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 HNRNPH2P55795 449 aaKnown RBP9.02□□□□□ -0.97
HMGB1-203ENST00000341423 RBP5P82980 135 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 COG7P83436 770 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 LPAL2Q16609 132 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 TMCO3Q6UWJ1 677 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 DSCC1Q9BVC3 393 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-203ENST00000341423 ZMYM5Q9UJ78 669 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 NAGPAQ9UK23 515 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 MAGEA10P43363 369 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-203ENST00000341423 YWHAHQ04917 246 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-203ENST00000341423 CEP55Q53EZ4 464 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 IFT43Q96FT9 208 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 OSMRQ99650 979 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 DCP1AQ9NPI6 582 aaPredicted RBP9.02□□□□□ -0.97
HMGB1-203ENST00000341423 CYP26B1Q9NR63 512 aa9.02□□□□□ -0.97
HMGB1-203ENST00000341423 ADD2P35612 726 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 MRPS6P82932 125 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 CSTF1Q05048 431 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 CHSY1Q86X52 802 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 AFAP1L2Q8N4X5 818 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 SCLYQ96I15 445 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 SLC29A3Q9BZD2 475 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZDHHC4Q9NPG8 344 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 KIF3CO14782 793 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 TAF6P49848 677 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZBTB41Q5SVQ8 909 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF852Q6ZMS4 543 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PPM1KQ8N3J5 372 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 IL22RA1Q8N6P7 574 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ALKBH8Q96BT7 664 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 TMEM117Q9H0C3 514 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF711Q9Y462 761 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 NRXN1Q9ULB1 1477 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 POLR2DO15514 142 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 NDUFB5O43674 189 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ATP2C2O75185 946 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 MAPK8P45983 427 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 SKP1P63208 163 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF699Q32M78 642 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PPP1R2P3Q6NXS1 205 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PPP1R18Q6NYC8 613 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 SCARA5Q6ZMJ2 495 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF438Q7Z4V0 828 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 RSPH1Q8WYR4 309 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZMYM2Q9UBW7 1377 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 LUC7L3O95232 432 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 CNPP09543 421 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ESRRAP11474 423 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 KELP23276 732 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF165P49910 485 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF177Q13360 481 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 NCAPHQ15003 741 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PSMD5Q16401 504 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 UBE2SQ16763 222 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 CCNYQ8ND76 341 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 MCRS1Q96EZ8 462 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 AGBL1Q96MI9 1066 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 FAM20AQ96MK3 541 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 LGMNQ99538 433 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 NLRC4Q9NPP4 1024 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PCMTD2Q9NV79 361 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 DEC1Q9P2X7 70 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 CDY2AQ9Y6F7 541 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 GPR75-ASB3A0A0A6YYF3 556 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 POTEIP0CG38 1075 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 POLR2EP19388 210 aaKnown RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PMLP29590 882 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 PTPN11Q06124 597 aaPredicted RBP9.01□□□□□ -0.97
HMGB1-203ENST00000341423 IQCB1Q15051 598 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 RNF43Q68DV7 783 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 BRAPQ7Z569 592 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 LMAN2LQ9H0V9 348 aa9.01□□□□□ -0.97
HMGB1-203ENST00000341423 SYTL3Q4VX76 610 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 EID3Q8N140 333 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 CCHCR1Q8TD31 782 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 MCCC1Q96RQ3 725 aaPredicted RBP9□□□□□ -0.97
HMGB1-203ENST00000341423 TMEM47Q9BQJ4 181 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 PARVGQ9HBI0 331 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 TLR9Q9NR96 1032 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 PHTF1Q9UMS5 762 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 SLC45A1Q9Y2W3 748 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 SPACA6W5XKT8 324 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 ITGAVP06756 1048 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 PTPN2P17706 415 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 GUCY2CP25092 1073 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 SOX5P35711 763 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 HALP42357 657 aa9□□□□□ -0.97
HMGB1-203ENST00000341423 LRMPQ12912 555 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms