RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TRPC5Q9UL62 973 aaPredicted RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 ASTN1O14525 1302 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 MEFVO15553 781 aaPredicted RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 TGFB1I1O43294 461 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ECEL1O95672 775 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 GAP43P17677 238 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ZNF131P52739 623 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 BAATQ14032 418 aaPredicted RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 CCDC6Q16204 474 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 QPCTQ16769 361 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 PPP1R21Q6ZMI0 780 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 RNF207Q6ZRF8 634 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ANKMY2Q8IV38 441 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 EPN3Q9H201 632 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 INTUQ9ULD6 942 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 AKAP11Q9UKA4 1901 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 LRRD1A4D1F6 860 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ZBTB7AO95365 584 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ATF2P15336 505 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 FECHP22830 423 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ZNF844Q08AG5 666 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 STRN3Q13033 797 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 RRP1BQ14684 758 aaKnown RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 EPHA7Q15375 998 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 CDO1Q16878 200 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 KIAA1755Q5JYT7 1200 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 PPP4R3CPQ6ZMV5 832 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 CCDC197Q8NCU1 140 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 DEPTORQ8TB45 409 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 FBF1Q8TES7 1133 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 LRRN4Q8WUT4 740 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 INPP4AQ96PE3 977 aaPredicted RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 LRRC4CQ9HCJ2 640 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 FAM114A2Q9NRY5 505 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 OPLAHO14841 1288 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 PYGMP11217 842 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 YWHABP31946 246 aaKnown RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 MTMR2Q13614 643 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 SMTNL2Q2TAL5 461 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 EDRF1Q3B7T1 1238 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 NIM1KQ8IY84 436 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 C4orf33Q8N1A6 199 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ARHGEF2Q92974 986 aaKnown RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 STK33Q9BYT3 514 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 PDGFDQ9GZP0 370 aaPredicted RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 FGFR1OP2Q9NVK5 253 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 WRAP73Q9P2S5 460 aaPredicted RBP12.8□□□□□ -0.36
USP1-201ENST00000339950 RNF14Q9UBS8 474 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ANAPC5Q9UJX4 755 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 ZHX2Q9Y6X8 837 aa12.8□□□□□ -0.36
USP1-201ENST00000339950 TCP11X1B4DZS4 312 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 MKRN3Q13064 507 aaKnown RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 ANKRD35Q8N283 1001 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 ISCUQ9H1K1 167 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 SGK1O00141 431 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 MYBL1P10243 752 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 PCK1P35558 622 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 RPS6P62753 249 aaKnown RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 RASA3Q14644 834 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 GLE1Q53GS7 698 aaKnown RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 ZNF720Q7Z2F6 126 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 CCDC63Q8NA47 563 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 HVCN1Q96D96 273 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 CLGNO14967 610 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 GAS8O95995 478 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 QARSP47897 775 aaKnown RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 MFAP3P55082 362 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 KRT17Q04695 432 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 CUL1Q13616 776 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 BRDTQ58F21 947 aaPredicted RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 LRRC34Q8IZ02 419 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 ZKSCAN4Q969J2 545 aaPredicted RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 SEC16BQ96JE7 1060 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 NYAP2Q9P242 653 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 DCTN4Q9UJW0 460 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 PASKQ96RG2 1323 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 NID2Q14112 1375 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 SCP2P22307 547 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 HMGCS2P54868 508 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 TRPC3Q13507 836 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 SNRNP35Q16560 246 aaKnown RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 UBAP2Q5T6F2 1119 aaKnown RBP12.79□□□□□ -0.36
USP1-201ENST00000339950 OTOP1Q7RTM1 612 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 NT5DC3Q86UY8 548 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 KAT2BQ92831 832 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 ZNF408Q9H9D4 720 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 TRPC6Q9Y210 931 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 MYH6P13533 1939 aa12.79□□□□□ -0.36
USP1-201ENST00000339950 EDIL3O43854 480 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 ZBED4O75132 1171 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 ATP13A4Q4VNC1 1196 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 SLC5A5Q92911 643 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 CRAMP1Q96RY5 1269 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 CCDC188H7C350 402 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 ATP9AO75110 1047 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 CREB1P16220 341 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 RWDD2BP57060 319 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 GABPAQ06546 454 aa12.78□□□□□ -0.36
USP1-201ENST00000339950 INTS8Q75QN2 995 aaKnown RBP12.78□□□□□ -0.36
USP1-201ENST00000339950 NLRP4Q96MN2 994 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms