RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 SLC27A1Q6PCB7 646 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 NPAS4Q8IUM7 802 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 HACE1Q8IYU2 909 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 TOP1MTQ969P6 601 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 ACO2Q99798 780 aaKnown RBP13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 TARS2Q9BW92 718 aaKnown RBP13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 ELAC1Q9H777 363 aaKnown RBP13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 SLC39A2Q9NP94 309 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 TNFSF13BQ9Y275 285 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 PCDHA5Q9Y5H7 936 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 CNTNAP2Q9UHC6 1331 aa13.07□□□□□ -0.32
SPTLC1-202ENST00000337841 TOM1L1O75674 476 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 RHOBTB3O94955 611 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 IBSPP21815 317 aaPredicted RBP13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 MATR3P43243 847 aaKnown RBP eCLIP13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 EHHADHQ08426 723 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 L1TD1Q5T7N2 865 aaKnown RBP13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 SLFN12LQ6IEE8 588 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 TAS1R3Q7RTX0 852 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 ECHDC2Q86YB7 292 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 RNF169Q8NCN4 708 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 ZNF507Q8TCN5 953 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 LINC01599Q8WXQ3 324 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 HPS3Q969F9 1004 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 STRA6Q9BX79 667 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 FAM105AQ9NUU6 356 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 TMEM161AQ9NX61 479 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 USP20Q9Y2K6 914 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 PCDHB2Q9Y5E7 798 aa13.06□□□□□ -0.32
SPTLC1-202ENST00000337841 DNAH12Q6ZR08 3092 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 HNRNPDLO14979 420 aaKnown RBP13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 EIF3DO15371 548 aaKnown RBP eCLIP13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 CLDN3O15551 220 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 HOXA2O43364 376 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 PPP1R37O75864 691 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 PRPF6O94906 941 aaKnown RBP13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 NPTXRO95502 500 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 PIGRP01833 764 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 MYBP10242 640 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 ITGA4P13612 1032 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 DEFB103AP81534 67 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 STK4Q13043 487 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 CAMK4Q16566 473 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 DCAF4L1Q3SXM0 396 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 UBXN11Q5T124 520 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 FAM117BQ6P1L5 589 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 MRPL10Q7Z7H8 261 aaKnown RBP13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 CDR2LQ86X02 465 aaPredicted RBP13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 MAP4K3Q8IVH8 894 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 HERC6Q8IVU3 1022 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 RAD9AQ99638 391 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 CLSTN2Q9H4D0 955 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 PDZD7Q9H5P4 517 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 UBN1Q9NPG3 1134 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 LOXHD1Q8IVV2 1947 aa13.05□□□□□ -0.32
SPTLC1-202ENST00000337841 TTLL13PA6NNM8 815 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 GJB5O95377 273 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 MCF2P10911 925 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 CASP5P51878 434 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 SNRPFP62306 86 aaKnown RBP13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 KYAT1Q16773 422 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 EEF1DP3Q658K8 133 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 MPZL3Q6UWV2 235 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 EPM2AIP1Q7L775 607 aaPredicted RBP13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 ZBTB33Q86T24 672 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 ABI1Q8IZP0 508 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 SPATA20Q8TB22 786 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 GPT2Q8TD30 523 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 EIF2AQ9BY44 585 aaKnown RBP13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 NUP62CLQ9H1M0 184 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 PTPRHQ9HD43 1115 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 KIAA1468Q9P260 1216 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 MSRAQ9UJ68 235 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 INSL6Q9Y581 213 aa13.04□□□□□ -0.32
SPTLC1-202ENST00000337841 RBAK-RBAKDNI3L0D1 243 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 TLL1O43897 1013 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 EDN1P05305 212 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 RAB30Q15771 203 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 KNOP1Q1ED39 458 aaKnown RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 LRIT3Q3SXY7 679 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 ZNF568Q3ZCX4 644 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 ZNF658Q5TYW1 1059 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 HS2ST1Q7LGA3 356 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 ZNF598Q86UK7 904 aaKnown RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 SCFD1Q8WVM8 642 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 RSPH1Q8WYR4 309 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 ERCC4Q92889 916 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 ZBTB45Q96K62 511 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 YME1L1Q96TA2 773 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 CCDC94Q9BW85 323 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 FGFBP2Q9BYJ0 223 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 GBP3Q9H0R5 595 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 CGNQ9P2M7 1197 aaKnown RBP13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 PARP2Q9UGN5 583 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 IPPQ9Y573 584 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 PCDHA11Q9Y5I1 949 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 PDE4DIPQ5VU43 2346 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 ARID2Q68CP9 1835 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 UBE4BO95155 1302 aa13.03□□□□□ -0.32
SPTLC1-202ENST00000337841 GRXCR1A8MXD5 290 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms