RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 USP17L4A6NCW7 530 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 USP17L1Q7RTZ2 530 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 CCT8L1PA6NM43 557 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 KLHL2O95198 593 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 ROR1Q01973 937 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 USP38Q8NB14 1042 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 AIFM3Q96NN9 605 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 GGA2Q9UJY4 613 aa10.92□□□□□ -0.66
CCDC88A-202ENST00000336838 GNGT2O14610 69 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 GSTA4O15217 222 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 PSTPIP1O43586 416 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 MAN1A2O60476 641 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 QARSP47897 775 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 MTMR1Q13613 665 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 ADRM1Q16186 407 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 MIGA2Q7L4E1 593 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 CYFIP2Q96F07 1278 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 STAP1Q9ULZ2 295 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 COL23A1Q86Y22 540 aaPredicted RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 TEX12Q9BXU0 123 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 INO80BQ9C086 356 aaPredicted RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 C17orf75Q9HAS0 396 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 WHRNQ9P202 907 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 MYH9P35579 1960 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 CLIC2O15247 247 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 PHKA2P46019 1235 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 ZNF699Q32M78 642 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 PAPD7Q5XG87 772 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 BLOC1S6Q9UL45 172 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 RICTORQ6R327 1708 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 PSMD3O43242 534 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 HIC1Q14526 733 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 BBS9Q3SYG4 887 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 SFR1Q86XK3 245 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 SPATA31A3Q5VYP0 1347 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 USP17L8P0C7I0 530 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 MYH13Q9UKX3 1938 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 TRIM49BA6NDI0 452 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 APOA4P06727 396 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 GPS1Q13098 491 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 E2F4Q16254 413 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 C16orf89Q6UX73 402 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 ATG9AQ7Z3C6 839 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 LRRC4Q9HBW1 653 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 PSMC5P62195 406 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 DYNLL1P63167 89 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 ASAP1Q9ULH1 1129 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 NUB1Q9Y5A7 615 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 SLIT3O75094 1523 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 P4HBP07237 508 aaKnown RBP10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 KCNA4P22459 653 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 TNFRSF8P28908 595 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 PMLP29590 882 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 IRAK1P51617 712 aa10.91□□□□□ -0.66
CCDC88A-202ENST00000336838 KIF28PB7ZC32 967 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 FTLP02792 175 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 MYCNP04198 464 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 ERFEQ4G0M1 354 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 MTHFD1LQ6UB35 978 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 TTC8Q8TAM2 541 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 ACTRT1Q8TDG2 376 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 HDAC6Q9UBN7 1215 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SNX24Q9Y343 169 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 POTEFA5A3E0 1075 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 POTEIP0CG38 1075 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 POTEEQ6S8J3 1075 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 EEF2KMTQ96G04 330 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 KCNK16Q96T55 309 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SENP7Q9BQF6 1050 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SUGCTQ9HAC7 445 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 PNMA3Q9UL41 463 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 CLDN3O15551 220 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 NCF2P19878 526 aaPredicted RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 GUCY1A3Q02108 690 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SAMD3Q8N6K7 520 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 TNIP2Q8NFZ5 429 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 AGPAT1Q99943 283 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 ERP44Q9BS26 406 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 TEX33O43247 280 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 MARK3P27448 753 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 GTF2H1P32780 548 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 POLE2P56282 527 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 CNGA3Q16281 694 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 GRAMD4Q6IC98 578 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 PRPF38AQ8NAV1 312 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SEC16BQ96JE7 1060 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 INTS2Q9H0H0 1204 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 NARFQ9UHQ1 456 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 POTEMA6NI47 508 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 ZYXQ15942 572 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 RTKN2Q8IZC4 609 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 TMEM51Q9NW97 253 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 SLC9A2Q9UBY0 812 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 PCDHA6Q9UN73 950 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 PCDHA8Q9Y5H6 950 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 CDY2AQ9Y6F7 541 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 CDY1Q9Y6F8 540 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 TMEM253P0C7T8 217 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 PRR29P0C7W0 189 aa10.9□□□□□ -0.66
CCDC88A-202ENST00000336838 EPHA10Q5JZY3 1008 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms