RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 MCL1Q07820 350 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 SNRNP35Q16560 246 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 CXCL17Q6UXB2 119 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 CREBRFQ8IUR6 639 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 CNGA4Q8IV77 575 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 GPD1LQ8N335 351 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 DNAJC5GQ8N7S2 189 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 CACTINQ8WUQ7 758 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 POMGNT1Q8WZA1 660 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 PANX2Q96RD6 677 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 KCNF1Q9H3M0 494 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 TNFSF13BQ9Y275 285 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 ZKSCAN5Q9Y2L8 839 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 PTPN22Q9Y2R2 807 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 DAAM1Q9Y4D1 1078 aa16.27■□□□□ 0.2
CCDC88C-202ENST00000334448 A0A087WZ62 844 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 FAM189A1O60320 539 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 MFAP3LO75121 409 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 GPR32O75388 356 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 VTNP04004 478 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 ASGR1P07306 291 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 ADRB2P07550 413 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 GTF2H1P32780 548 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 CLDN10P78369 228 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 KCNA10Q16322 511 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 NBPF20Q3BBV1 942 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 USP37Q86T82 979 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 PPFIBP1Q86W92 1011 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 CBWD2Q8IUF1 395 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 TC2NQ8N9U0 490 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 CCDC112Q8NEF3 446 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 FDXACB1Q9BRP7 624 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 HAPLN2Q9GZV7 340 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 TMX1Q9H3N1 280 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 PCIF1Q9H4Z3 704 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 MINDY3Q9H8M7 445 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 PLCB1Q9NQ66 1216 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 FBXL5Q9UKA1 691 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 AGO2Q9UKV8 859 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 CAPN11Q9UMQ6 739 aa16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.26■□□□□ 0.19
CCDC88C-202ENST00000334448 AKR1B15C9JRZ8 316 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 INO80B-WBP1J3KQ70 363 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 PES1O00541 588 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 TREHO43280 583 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 STX10O60499 249 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 N4BP1O75113 896 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 TPM1P09493 284 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 KCNJ6P48051 423 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 VAMP7P51809 220 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 NLRP11P59045 1033 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 CCZ1BP86790 482 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 CCZ1P86791 482 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 CYP24A1Q07973 514 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 PRPF4BQ13523 1007 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 C1orf220Q5T0J3 134 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 DPY19L2P1Q6NXN4 242 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 MPZL3Q6UWV2 235 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 RUFY4Q6ZNE9 571 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 SERINC5Q86VE9 423 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 ZSCAN30Q86W11 494 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 PLEKHO2Q8TD55 490 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 SEZ6LQ9BYH1 1024 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 INO80BQ9C086 356 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 PAK6Q9NQU5 681 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 USP20Q9Y2K6 914 aa16.25■□□□□ 0.19
CCDC88C-202ENST00000334448 GRIN2DO15399 1336 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 ZNF233A6NK53 670 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 TTLL13PA6NNM8 815 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 CLDN3O15551 220 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 IQCF3P0C7M6 154 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 DARSP14868 501 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 FMO5P49326 533 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 FXR1P51114 621 aaKnown RBP eCLIP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 ACLYP53396 1101 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 RBL2Q08999 1139 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 KCNMA1Q12791 1236 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 NOLC1Q14978 699 aaKnown RBP eCLIP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 PSMD6Q15008 389 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 KYAT1Q16773 422 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 PTPN21Q16825 1174 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 DCAF17Q5H9S7 520 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 ATF7IP2Q5U623 682 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 CRELD2Q6UXH1 353 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 SLC43A3Q8NBI5 491 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 ZSWIM2Q8NEG5 633 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 PARD3BQ8TEW8 1205 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 NLRP7Q8WX94 980 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 DNAJC7Q99615 494 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 MSTO1Q9BUK6 570 aa16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 GCOM2Q9BZD3 368 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-202ENST00000334448 TTC26A0AVF1 554 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 OGTO15294 1046 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 TSPAN1O60635 241 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 MCF2P10911 925 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 HNRNPH3P31942 346 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 ZBED6P86452 979 aa16.23■□□□□ 0.19
CCDC88C-202ENST00000334448 GBP6Q6ZN66 633 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms