RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 LILRA6Q6PI73 481 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 PDZD3Q86UT5 571 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 RNF168Q8IYW5 571 aaPredicted RBP16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 LINC01465Q8N7H1 131 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 URGCPQ8TCY9 931 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 DNASE1L2Q92874 299 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 LOXL4Q96JB6 756 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 SCLT1Q96NL6 688 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 MXRA8Q9BRK3 442 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 LMAN1LQ9HAT1 526 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 MARCH5Q9NX47 278 aa16.73■□□□□ 0.27
CTHRC1-201ENST00000330295 MYH9P35579 1960 aaKnown RBP16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 MAGEB2O15479 319 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 TMOD1P28289 359 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 DSG1Q02413 1049 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 NMIQ13287 307 aaPredicted RBP16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 HEATR6Q6AI08 1181 aaKnown RBP16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 EFCAB12Q6NXP0 572 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 CKAP2LQ8IYA6 745 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 LRRC71Q8N4P6 559 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 ITFG1Q8TB96 612 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 FAM193BQ96PV7 902 aaPredicted RBP16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 KRT23Q9C075 422 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 FAM105AQ9NUU6 356 aa16.72■□□□□ 0.27
CTHRC1-201ENST00000330295 SPDYE3A6NKU9 549 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 ECI2O75521 394 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 CSDE1O75534 798 aaKnown RBP16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 EPN2O95208 641 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 EFEMP2O95967 443 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 KIF5BP33176 963 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 SWSAP1Q6NVH7 229 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 GLYCTKQ8IVS8 523 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 PSTPIP2Q9H939 334 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 AGO4Q9HCK5 861 aaKnown RBP16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 CEP131Q9UPN4 1083 aa16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 PRG3Q9Y2Y8 225 aaPredicted RBP16.71■□□□□ 0.27
CTHRC1-201ENST00000330295 SALL3Q9BXA9 1300 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 BPTFQ12830 3046 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 CYSRT1A8MQ03 144 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 K7ESF4 209 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 DDX39AO00148 427 aaKnown RBP16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 ZNF623O75123 536 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 PAPSS2O95340 614 aaPredicted RBP16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 RAB27AP51159 221 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 GAS6Q14393 721 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 UBE2SQ16763 222 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 PLA2G2CQ5R387 149 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 SH3PXD2AQ5TCZ1 1133 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 TRMT1LQ7Z2T5 733 aaKnown RBP16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 NPAS3Q8IXF0 933 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 SPEM1Q8N4L4 309 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 NLRP7Q8WX94 980 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 PLA2G2FQ9BZM2 168 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 SMOC1Q9H4F8 434 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 PCDHA6Q9UN73 950 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 GPSM3Q9Y4H4 160 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 PCDHA8Q9Y5H6 950 aa16.7■□□□□ 0.26
CTHRC1-201ENST00000330295 HNRNPA1P09651 372 aaKnown RBP eCLIP16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 FXR2P51116 673 aaKnown RBP eCLIP16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 AFF1P51825 1210 aaKnown RBP16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 MIS18BP1Q6P0N0 1132 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 C19orf48Q6RUI8 117 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 AGMOQ6ZNB7 445 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 RILPL2Q969X0 211 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 PGBD4Q96DM1 585 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 MBOAT7Q96N66 472 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 CNNM2Q9H8M5 875 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 CHST7Q9NS84 486 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 FNIP2Q9P278 1114 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 KANSL3Q9P2N6 904 aa16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 PIN4Q9Y237 131 aaKnown RBP16.69■□□□□ 0.26
CTHRC1-201ENST00000330295 RAP1GAPP47736 663 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 MFAP1P55081 439 aaKnown RBP16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 PLEKHM2Q8IWE5 1019 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 FAM3CQ92520 227 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 RRP36Q96EU6 259 aaKnown RBP16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 B3GALT6Q96L58 329 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 OSBPL3Q9H4L5 887 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 LY9Q9HBG7 655 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 FBXW11Q9UKB1 542 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 NEUROG3Q9Y4Z2 214 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 MAFBQ9Y5Q3 323 aaPredicted RBP16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 NOTCH4Q99466 2003 aa16.68■□□□□ 0.26
CTHRC1-201ENST00000330295 COL4A2P08572 1712 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 EIF4E1BA6NMX2 242 aaKnown RBP16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 POMCP01189 267 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 CHRNB1P11230 501 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 CEACAM1P13688 526 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 RPL17P18621 184 aaKnown RBP16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 SFPQP23246 707 aaKnown RBP eCLIP16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 TROAPQ12815 778 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 ADAM32Q8TC27 787 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 BBC3Q96PG8 261 aaPredicted RBP16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 EDEM2Q9BV94 578 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 GCOM2Q9BZD3 368 aaPredicted RBP16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 RSAD1Q9HA92 442 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 SEC63Q9UGP8 760 aaKnown RBP16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 POLIQ9UNA4 740 aa16.67■□□□□ 0.26
CTHRC1-201ENST00000330295 MSRB2Q9Y3D2 182 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms