RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CHID1Q9BWS9 393 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CHKBQ9Y259 395 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 GPC6Q9Y625 555 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZSCAN5CA6NGD5 496 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 K7ERI5 159 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 BCAS1O75363 584 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 SEC31AO94979 1220 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ARHGEF15O94989 841 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CCND1P24385 295 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 DNM2P50570 870 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 RAB7AP51149 207 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ALDH6A1Q02252 535 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CYP27A1Q02318 531 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 MDH1BQ5I0G3 518 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ALS2CLQ60I27 953 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CYP4F22Q6NT55 531 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF227Q86WZ6 799 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 COG1Q8WTW3 980 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 PPP1R36Q96LQ0 422 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 ZSCAN5AQ9BUG6 496 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 NUP58Q9BVL2 599 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CCSER1Q9C0I3 900 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 MARCH7Q9H992 704 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 PIH1D3Q9NQM4 214 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CYP26B1Q9NR63 512 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 CNPY2Q9Y2B0 182 aa8.07□□□□□ -1.12
LIMCH1-201ENST00000313860 A0A0X1KG70 313 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 AHCYL1O43865 530 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 MAGEA11P43364 429 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PLOD1Q02809 727 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 EEF1A2Q05639 463 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 KIZQ2M2Z5 673 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 EDRF1Q3B7T1 1238 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 OGFRL1Q5TC84 451 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TBC1D9BQ66K14 1250 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 KIAA1841Q6NSI8 718 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 KIRREL3Q8IZU9 778 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 ANKRD13CQ8N6S4 541 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 LENG1Q96BZ8 264 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 COPS4Q9BT78 406 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 HAUS4Q9H6D7 363 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 ENTPD7Q9NQZ7 604 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PFDN2Q9UHV9 154 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 DMRT2Q9Y5R5 561 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PLEKHG3A1L390 1219 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 GNAI2P04899 355 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TALDO1P37837 337 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 METAP2P50579 478 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PDE3AQ14432 1141 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SMCO1Q147U7 214 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 RBBP7Q16576 425 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SNX32Q86XE0 403 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SLC10A4Q96EP9 437 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 AIFM2Q9BRQ8 373 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 CAPN10Q9HC96 672 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TBC1D24Q9ULP9 559 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 DHX29Q7Z478 1369 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 ENC1O14682 589 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 ZBTB22O15209 634 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 AKAP10O43572 662 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 BNIP3LO60238 219 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PALMO75781 387 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 CLTBP09497 229 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PAX3P23760 479 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TRAF3Q13114 568 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 GTF2IRD2BQ6EKJ0 949 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TUBA3EQ6PEY2 450 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 GTF2IRD2Q86UP8 949 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SYTL1Q8IYJ3 562 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 CACTIN-AS1Q8N1I8 211 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SPIRE2Q8WWL2 714 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 V9GYQ6 96 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 A0A1W2PQ72 361 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 KCNK3O14649 394 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 DHX15O43143 795 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 HLA-DRAP01903 254 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 MYL6BP14649 208 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 IL10P22301 178 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PPP1R2P41236 205 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 MORF4L2Q15014 288 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PPP1R2P3Q6NXS1 205 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 THAP5Q7Z6K1 395 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PEG10Q86TG7 708 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 RNF135Q8IUD6 432 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SDR16C5Q8N3Y7 309 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 GRK7Q8WTQ7 553 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 GSDMCQ9BYG8 508 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TOR3AQ9H497 397 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 SCN3BQ9NY72 215 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 TMEM63CQ9P1W3 806 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 PHF11Q9UIL8 331 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 ZFP69BQ9UJL9 534 aa8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 R3HDM2Q9Y2K5 976 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-201ENST00000313860 H7C0C1 242 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 STX16O14662 325 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 HSPA12AO43301 675 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 MYCP01106 439 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF3P17036 446 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 CYP2C19P33261 490 aa8.05□□□□□ -1.12
LIMCH1-201ENST00000313860 ATP5OP48047 213 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms