RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 DPP9Q86TI2 863 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 FAM228AQ86W67 206 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 TRIM59Q8IWR1 403 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 ADGRF4Q8IZF3 695 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 CHST13Q8NET6 341 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 CCHCR1Q8TD31 782 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 RASGRP4Q8TDF6 673 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 RAPGEF5Q92565 580 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 LARP4BQ92615 738 aaKnown RBP11.18□□□□□ -0.62
UPF3B-201ENST00000276201 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.18□□□□□ -0.625e-7■□□□□ 11.1
UPF3B-201ENST00000276201 GANQ9H2C0 597 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 C6orf50Q9HD87 102 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 SLC39A2Q9NP94 309 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 RNF146Q9NTX7 359 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 CCPG1Q9ULG6 757 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 STXBP5LQ9Y2K9 1186 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 SMCHD1A6NHR9 2005 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 KLRF2D3W0D1 207 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 PGRMC1O00264 195 aaKnown RBP11.18□□□□□ -0.62
UPF3B-201ENST00000276201 PPFIA2O75334 1257 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 ALAS1P13196 640 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 PRKCIP41743 596 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 MRPS25P82663 173 aaKnown RBP11.18□□□□□ -0.62
UPF3B-201ENST00000276201 CLUL1Q15846 466 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 TKFCQ3LXA3 575 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 TDRD12Q587J7 1177 aaKnown RBP11.18□□□□□ -0.62
UPF3B-201ENST00000276201 ERMARDQ5T6L9 678 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 MAP3K21Q5TCX8 1036 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 MAB21L3Q8N8X9 362 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 LMBR1Q8WVP7 490 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 PSMB7Q99436 277 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 HINFPQ9BQA5 517 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 SUCLA2Q9P2R7 463 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-201ENST00000276201 FBXO40Q9UH90 709 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 FBXL5Q9UKA1 691 aa11.18□□□□□ -0.62
UPF3B-201ENST00000276201 TPX2Q9ULW0 747 aaKnown RBP11.18□□□□□ -0.62
UPF3B-201ENST00000276201 ESYT3A0FGR9 886 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 CFAP73A6NFT4 308 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 CTNNA1P35221 906 aaKnown RBP11.17□□□□□ -0.62
UPF3B-201ENST00000276201 ASIC2Q16515 512 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 ZNF792Q3KQV3 632 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 HYIQ5T013 277 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 PPP4R3CPQ6ZMV5 832 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 MYOCDQ8IZQ8 938 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 CCDC26Q8TAB7 109 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 PLIN2Q99541 437 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 RAB34Q9BZG1 259 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 FAM129AQ9BZQ8 928 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 ACAD9Q9H845 621 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 PLXNA1Q9UIW2 1896 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 DNAJC25-GNG10A0A024R161 153 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 CYTH3O43739 400 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 FTCDO95954 541 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 NUDT17P0C025 328 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 PRKAR2AP13861 404 aaKnown RBP11.17□□□□□ -0.62
UPF3B-201ENST00000276201 CACNB2Q08289 660 aaPredicted RBP11.17□□□□□ -0.62
UPF3B-201ENST00000276201 OLFML2BQ68BL8 750 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 TMC3Q7Z5M5 1100 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 TBC1D5Q92609 795 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 MAML3Q96JK9 1138 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 TMEM109Q9BVC6 243 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 LSM14BQ9BX40 385 aaKnown RBP11.17□□□□□ -0.62
UPF3B-201ENST00000276201 RNF208Q9H0X6 261 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 JMJD4Q9H9V9 463 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 PPANQ9NQ55 473 aaKnown RBP11.17□□□□□ -0.62
UPF3B-201ENST00000276201 BATF3Q9NR55 127 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 SLC5A4Q9NY91 659 aa11.17□□□□□ -0.62
UPF3B-201ENST00000276201 A0A087X0T9 212 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 CCT8L1PA6NM43 557 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 F8VZ95 297 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 FAM228BP0C875 321 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 KIAA0753Q2KHM9 967 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 TMEM266Q2M3C6 531 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 QRICH1Q2TAL8 776 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 EDRF1Q3B7T1 1238 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 DPY19L2P1Q6NXN4 242 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 HOOK3Q86VS8 718 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 SYCE1Q8N0S2 351 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 ANKRD35Q8N283 1001 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 PGM2Q96G03 612 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 XPO6Q96QU8 1125 aaKnown RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 TMEM106CQ9BVX2 250 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 VAT1LQ9HCJ6 419 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 A0A1B0GUA9 196 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 SART1O43290 800 aaKnown RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 CCNT1O60563 726 aaKnown RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 DRG2P55039 364 aaKnown RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 POU5F1Q01860 360 aaKnown RBP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 KLHL30Q0D2K2 578 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 HLTFQ14527 1009 aaKnown RBP eCLIP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 QPCTQ16769 361 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 MFSD14CQ5VZR4 134 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 HEATR3Q7Z4Q2 680 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 PIGWQ7Z7B1 504 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 CLEC4DQ8WXI8 215 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 HVCN1Q96D96 273 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 CHMP6Q96FZ7 201 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 FGD4Q96M96 766 aa11.16□□□□□ -0.62
UPF3B-201ENST00000276201 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.16□□□□□ -0.62
UPF3B-201ENST00000276201 EBF2Q9HAK2 575 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms