RNA–Protein interactions for RNA: ENST00000266880.11

CHFR-201, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2 BASIC

Gene CHFR, Length 11,133 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-201ENST00000266880 NDFIP2Q9NV92 336 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 SENP1Q9P0U3 644 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 TNKSO95271 1327 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 URB1O60287 2271 aaKnown RBP11.8□□□□□ -0.52
CHFR-201ENST00000266880 CCDC188H7C350 402 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 ZSCAN20P17040 1043 aaPredicted RBP11.8□□□□□ -0.52
CHFR-201ENST00000266880 HNRNPH1P31943 449 aaKnown RBP11.8□□□□□ -0.52
CHFR-201ENST00000266880 WWP1Q9H0M0 922 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 PCDHA1Q9Y5I3 950 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 PDAP1Q13442 181 aaKnown RBP11.8□□□□□ -0.52
CHFR-201ENST00000266880 MAPK11Q15759 364 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 MB21D1Q8N884 522 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 SLC17A8Q8NDX2 589 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 TSSK1BQ9BXA7 367 aa11.8□□□□□ -0.52
CHFR-201ENST00000266880 PRPF39Q86UA1 669 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 ERP27Q96DN0 273 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 USP27XA6NNY8 438 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 MRPS35P82673 323 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 LRRC74AQ0VAA2 488 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 COG1Q8WTW3 980 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 RERGLQ9H628 205 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 INO80B-WBP1J3KQ70 363 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 SLC39A14Q15043 492 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 ATAD3BQ5T9A4 648 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 PLEKHA7Q6IQ23 1121 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 POTEEQ6S8J3 1075 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.79□□□□□ -0.52
CHFR-201ENST00000266880 ERICH1Q86X53 443 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 INO80BQ9C086 356 aaPredicted RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 CAAP1Q9H8G2 361 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 USP15Q9Y4E8 981 aaPredicted RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 ABCE1P61221 599 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 TP53BP2Q13625 1128 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 KRT77Q7Z794 578 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 TRPM2O94759 1503 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 SH3TC1Q8TE82 1336 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 ROR1Q01973 937 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 MKRN3Q13064 507 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 UXS1Q8NBZ7 420 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 ZNF483Q8TF39 744 aaPredicted RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 NMD3Q96D46 503 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 SEC16BQ96JE7 1060 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 DDX47Q9H0S4 455 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 MBD2Q9UBB5 411 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 TRPM8Q7Z2W7 1104 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 ADAM33Q9BZ11 813 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 EIF3HO15372 352 aaKnown RBP eCLIP11.79□□□□□ -0.52
CHFR-201ENST00000266880 ARMCX4Q5H9R4 360 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 SPDYAQ5MJ70 313 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 PUDPQ08623 228 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 LAMC2Q13753 1193 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 SYCP2LQ5T4T6 812 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 C1orf54Q8WWF1 131 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 C19orf60Q96EN9 201 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 HDHD2Q9H0R4 259 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 CDYLQ9Y232 598 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 M0R2C6 588 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 ZCCHC18P0CG32 403 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 GADL1Q6ZQY3 521 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 UNC45BQ8IWX7 931 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 NRBP2Q9NSY0 501 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 SCN3BQ9NY72 215 aa11.79□□□□□ -0.52
CHFR-201ENST00000266880 DIS3Q9Y2L1 958 aaKnown RBP11.79□□□□□ -0.52
CHFR-201ENST00000266880 MROH5Q6ZUA9 1318 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 SRP72O76094 671 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 C11orf88Q6PI97 169 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 POLR3EQ9NVU0 708 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 KIF1BO60333 1816 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 RNMTO43148 476 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 S100A9P06702 114 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 MARK3P27448 753 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 PDIA3P30101 505 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 ZNF467Q7Z7K2 595 aaPredicted RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 PDE4DIPQ5VU43 2346 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 MYH9P35579 1960 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 PPP6R2O75170 966 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 USP14P54578 494 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 CENPPQ6IPU0 288 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 ARHGEF25Q86VW2 580 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 TSPAN18Q96SJ8 248 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 AP4S1Q9Y587 144 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 FKBP3Q00688 224 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 KIAA1755Q5JYT7 1200 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 DDI2Q5TDH0 399 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 RBM41Q96IZ5 413 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 NLRP4Q96MN2 994 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 GCOM2Q9BZD3 368 aaPredicted RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 TAF4O00268 1085 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 USP1O94782 785 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 ALKBH5Q6P6C2 394 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 SH3KBP1Q96B97 665 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 DHX36Q9H2U1 1008 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 ABHD10Q9NUJ1 306 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 USP17L12C9JPN9 530 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 USP17L21D6R901 530 aa11.78□□□□□ -0.52
CHFR-201ENST00000266880 HNRNPRO43390 633 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 NLRP11P59045 1033 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 KRR1Q13601 381 aaKnown RBP11.78□□□□□ -0.52
CHFR-201ENST00000266880 PLBD2Q8NHP8 589 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms