RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	SPS100	P13130	326 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	DPM1	P14020	267 aa	Known RBP	0.8	□□□□□ -2.28
CSN9	YDR179C	ERD1	P16151	362 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	RDS1	P25611	832 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	CDC13	P32797	924 aa	Known RBP	0.8	□□□□□ -2.28
CSN9	YDR179C	MDL1	P33310	695 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	0.8	□□□□□ -2.28	not detected
CSN9	YDR179C	CAJ1	P39101	391 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	PIR5	P46999	287 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	TAF6	P53040	516 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	COS6	P53344	381 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	EBS1	Q03466	884 aa	Known RBP	0.8	□□□□□ -2.28
CSN9	YDR179C	TVP15	Q03860	143 aa		0.8	□□□□□ -2.28
CSN9	YDR179C	GRH1	Q04410	372 aa	Known RBP	0.8	□□□□□ -2.28
CSN9	YDR179C	DCP1	Q12517	231 aa	Predicted RBP	0.8	□□□□□ -2.28
CSN9	YDR179C	YLL053C	P0CD98	152 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	MNE1	P24720	663 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	CIN8	P27895	1000 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	VMA5	P31412	392 aa	Known RBP	0.79	□□□□□ -2.28
CSN9	YDR179C	MRPL3	P36516	390 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	PET8	P38921	284 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	AVT6	P40074	448 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	BTT1	P40314	149 aa	Predicted RBP	0.79	□□□□□ -2.28
CSN9	YDR179C	MRPL49	P40858	161 aa	Predicted RBP	0.79	□□□□□ -2.28
CSN9	YDR179C	RPA34	P47006	233 aa	Predicted RBP	0.79	□□□□□ -2.28
CSN9	YDR179C	YJR146W	P47174	117 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	PRP24	P49960	444 aa	Known RBP	0.79	□□□□□ -2.28
CSN9	YDR179C	MND1	P53102	219 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	YDL144C	Q07589	356 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	BOL1	Q3E793	110 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	LAG2	Q92325	660 aa		0.79	□□□□□ -2.28
CSN9	YDR179C	OSM1	P21375	501 aa	Known RBP	0.78	□□□□□ -2.28
CSN9	YDR179C	VMA8	P32610	256 aa	Known RBP	0.78	□□□□□ -2.28
CSN9	YDR179C	SPL2	P38839	148 aa		0.78	□□□□□ -2.28
CSN9	YDR179C	SOP4	P39543	234 aa	Predicted RBP	0.78	□□□□□ -2.28
CSN9	YDR179C	PXR1	P53335	271 aa	Predicted RBP	0.78	□□□□□ -2.28
CSN9	YDR179C	SLM2	P53955	656 aa		0.78	□□□□□ -2.28
CSN9	YDR179C	RVB1	Q03940	463 aa	Known RBP	0.78	□□□□□ -2.28
CSN9	YDR179C	PAR32	Q12515	295 aa	Known RBP	0.78	□□□□□ -2.28
CSN9	YDR179C	YAL063C-A	Q3E791	96 aa		0.78	□□□□□ -2.28
CSN9	YDR179C	HXT2	P23585	541 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	RPL16B	P26785	198 aa	Known RBP	0.77	□□□□□ -2.29
CSN9	YDR179C	IMP1	P28627	190 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	SWE1	P32944	819 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	COY1	P34237	679 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	FCY21	P40039	528 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	COG3	P40094	801 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	YJL027C	P47063	138 aa	Predicted RBP	0.77	□□□□□ -2.29
CSN9	YDR179C	UTP6	Q02354	440 aa	Known RBP	0.77	□□□□□ -2.29
CSN9	YDR179C	YLL007C	Q07799	665 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	YPL278C	Q08990	100 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	AGC1	Q12482	902 aa		0.77	□□□□□ -2.29
CSN9	YDR179C	NUP157	P40064	1391 aa	Known RBP	0.76	□□□□□ -2.29
CSN9	YDR179C	GAL7	P08431	366 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	GPX1	P36014	167 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	DAD2	P36162	133 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	YHL026C	P38740	315 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	SUR2	P38992	349 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	KRE29	P40026	464 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	UTP25	P40498	721 aa	Known RBP	0.76	□□□□□ -2.29
CSN9	YDR179C	YIL089W	P40500	205 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	YIL012W	P40551	113 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	OST3	P48439	350 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	NBL1	Q3E7Y6	73 aa		0.76	□□□□□ -2.29
CSN9	YDR179C	YEL009C-A	A0A023PZF2	135 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	YOR062C	P36025	268 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	YSW1	P38280	609 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	YHR035W	P38769	630 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	LRP1	P38801	184 aa	Known RBP	0.75	□□□□□ -2.29
CSN9	YDR179C	SPT8	P38915	602 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	PRP39	P39682	629 aa	Known RBP	0.75	□□□□□ -2.29
CSN9	YDR179C	LSM4	P40070	187 aa	Known RBP	0.75	□□□□□ -2.29
CSN9	YDR179C	SEC28	P40509	296 aa	Known RBP	0.75	□□□□□ -2.29
CSN9	YDR179C	YJL016W	P47072	561 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	IRC4	Q03036	179 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	SNX41	Q04053	625 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	FCF1	Q05498	189 aa	Predicted RBP	0.75	□□□□□ -2.29
CSN9	YDR179C	YLR446W	Q06204	433 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	YPL150W	Q12152	901 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	UTP23	Q12339	254 aa	Known RBP	0.75	□□□□□ -2.29
CSN9	YDR179C	ISD11	Q6Q560	94 aa		0.75	□□□□□ -2.29
CSN9	YDR179C	COG7	P53195	279 aa		0.74	□□□□□ -2.29
CSN9	YDR179C	YNL146W	P53906	100 aa		0.74	□□□□□ -2.29
CSN9	YDR179C	CTS2	Q06350	511 aa		0.74	□□□□□ -2.29
CSN9	YDR179C	SKS1	Q12505	502 aa		0.74	□□□□□ -2.29
CSN9	YDR179C	BMH1	P29311	267 aa	Known RBP	0.73	□□□□□ -2.29
CSN9	YDR179C	TPO5	P36029	618 aa		0.73	□□□□□ -2.29
CSN9	YDR179C	ALP1	P38971	573 aa		0.73	□□□□□ -2.29
CSN9	YDR179C	AYR1	P40471	297 aa		0.73	□□□□□ -2.29
CSN9	YDR179C	YFL040W	P43562	540 aa		0.73	□□□□□ -2.29
CSN9	YDR179C	SWT21	P53873	357 aa	Predicted RBP	0.73	□□□□□ -2.29
CSN9	YDR179C	EOS1	P53938	366 aa		0.73	□□□□□ -2.29
CSN9	YDR179C	ATG5	Q12380	294 aa		0.73	□□□□□ -2.29
CSN9	YDR179C	CAT2	P32796	670 aa	Known RBP	0.72	□□□□□ -2.29
CSN9	YDR179C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	0.72	□□□□□ -2.29	not detected
CSN9	YDR179C	MCH2	P36032	473 aa		0.72	□□□□□ -2.29
CSN9	YDR179C	RPL10	P41805	221 aa	Known RBP	0.72	□□□□□ -2.29
CSN9	YDR179C	RPE1	P46969	238 aa		0.72	□□□□□ -2.29
CSN9	YDR179C	YGL114W	P53134	725 aa		0.72	□□□□□ -2.29
CSN9	YDR179C	INM2	Q05533	292 aa		0.72	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 27.2 ms