RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 CCDC70Q6NSX1 233 aa16.41■□□□□ 0.22
TRIM3-215ENST00000639856 BSNDQ8WZ55 320 aa16.41■□□□□ 0.22
TRIM3-215ENST00000639856 KIFC3Q9BVG8 833 aa16.41■□□□□ 0.22
TRIM3-215ENST00000639856 MROH8Q9H579 483 aa16.41■□□□□ 0.22
TRIM3-215ENST00000639856 NAGPAQ9UK23 515 aa16.41■□□□□ 0.22
TRIM3-215ENST00000639856 ATG7O95352 703 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 PAFAH1B1P43034 410 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 FKBP1BP68106 108 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 GPS2Q13227 327 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 CCDC181Q5TID7 509 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 GJB7Q6PEY0 223 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 OTUD6AQ7L8S5 288 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 FBXO16Q8IX29 292 aaPredicted RBP16.4■□□□□ 0.22
TRIM3-215ENST00000639856 TMEM206Q9H813 350 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 ZNF302Q9NR11 478 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 CYP26B1Q9NR63 512 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 RNF14Q9UBS8 474 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 PLXNB2O15031 1838 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 GSTTP1A0A1W2PQM5 241 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 POLR3GO15318 223 aaPredicted RBP16.4■□□□□ 0.22
TRIM3-215ENST00000639856 EXOC3O60645 756 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 GGPS1O95749 300 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 FERP16591 822 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 BFSP1Q12934 665 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 CBWD6Q4V339 395 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 CBWD3Q5JTY5 395 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 CBWD5Q5RIA9 395 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 ALKBH5Q6P6C2 394 aaKnown RBP16.4■□□□□ 0.22
TRIM3-215ENST00000639856 HAUS6Q7Z4H7 955 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 C2orf69Q8N8R5 385 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 GPRC5AQ8NFJ5 357 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 PCYT2Q99447 389 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 TIPINQ9BVW5 301 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 XPNPEP1Q9NQW7 623 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 ATP8B3O60423 1300 aa16.4■□□□□ 0.22
TRIM3-215ENST00000639856 STAT1P42224 750 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 MTERF2Q49AM1 385 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 MEI1Q5TIA1 1274 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 SPRYD7Q5W111 196 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 CST9Q5W186 159 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 VPS36Q86VN1 386 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 TMEM174Q8WUU8 243 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 NENFQ9UMX5 172 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 MAFBQ9Y5Q3 323 aaPredicted RBP16.39■□□□□ 0.21
TRIM3-215ENST00000639856 DKC1O60832 514 aaKnown RBP eCLIP16.39■□□□□ 0.21
TRIM3-215ENST00000639856 TRIM49P0CI25 452 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 TRIM49CP0CI26 452 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 NCKAP1LP55160 1127 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 TMEM63BQ5T3F8 832 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 SHCBP1Q8NEM2 672 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 RUBCNQ92622 972 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 PTPN18Q99952 460 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 STK33Q9BYT3 514 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 PDE11AQ9HCR9 933 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 ZCCHC17Q9NP64 241 aaKnown RBP16.39■□□□□ 0.21
TRIM3-215ENST00000639856 PLXNA1Q9UIW2 1896 aa16.39■□□□□ 0.21
TRIM3-215ENST00000639856 IGKV6D-21A0A0A0MT36 114 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 GRID2IPA4D2P6 1211 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 CCDC169A6NNP5 214 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 F8VZ95 297 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 H3BQF6 201 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 FTCDO95954 541 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 SOX5P35711 763 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 NPTX2P47972 431 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 GTF2BQ00403 316 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 CFAP221Q4G0U5 840 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 XKR3Q5GH77 459 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 CCNI2Q6ZMN8 369 aaPredicted RBP16.38■□□□□ 0.21
TRIM3-215ENST00000639856 ZNF771Q7L3S4 317 aaPredicted RBP16.38■□□□□ 0.21
TRIM3-215ENST00000639856 C12orf56Q8IXR9 622 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 ACCSQ96QU6 501 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 ST6GALNAC4Q9H4F1 302 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 PDLIM7Q9NR12 457 aa16.38■□□□□ 0.21
TRIM3-215ENST00000639856 LRRIQ3A6PVS8 624 aaPredicted RBP16.37■□□□□ 0.21
TRIM3-215ENST00000639856 EVI5O60447 810 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 ZMYND10O75800 440 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 GFPT2O94808 682 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 OATP04181 439 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 MYL7Q01449 175 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 DMP1Q13316 513 aaPredicted RBP16.37■□□□□ 0.21
TRIM3-215ENST00000639856 NEDD9Q14511 834 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 METTL7BQ6UX53 244 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 ANKRD23Q86SG2 305 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 RDH13Q8NBN7 331 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 TMEM161BQ8NDZ6 487 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 LRRC1Q9BTT6 524 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 PCIF1Q9H4Z3 704 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 SMARCAL1Q9NZC9 954 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 EHD2Q9NZN4 543 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 DNAJC12Q9UKB3 198 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 SLC45A1Q9Y2W3 748 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 DAAM1Q9Y4D1 1078 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 ADGRA3Q8IWK6 1321 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 DGAT1O75907 488 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 TGFB3P10600 412 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 KRT13P13646 458 aa16.37■□□□□ 0.21
TRIM3-215ENST00000639856 TCF7P36402 384 aaPredicted RBP16.37■□□□□ 0.21
TRIM3-215ENST00000639856 DRAP1Q14919 205 aaPredicted RBP16.37■□□□□ 0.21
TRIM3-215ENST00000639856 IFI16Q16666 785 aaKnown RBP16.37■□□□□ 0.21
TRIM3-215ENST00000639856 INTS8Q75QN2 995 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms