RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CCDC3Q9BQI4 270 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CPSF2Q9P2I0 782 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 KIF24Q5T7B8 1368 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 LRRD1A4D1F6 860 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 ECEL1O95672 775 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SDC4P31431 198 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 GRK3P35626 688 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 IFNAR2P48551 515 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CDH18Q13634 790 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 IL31Q6EBC2 164 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CABS1Q96KC9 395 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TUBB6Q9BUF5 446 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 POLR3FQ9H1D9 316 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 HEG1Q9ULI3 1381 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CLTCQ00610 1675 aaKnown RBP6.51□□□□□ -1.37
SCN1A-217ENST00000637988 FGAP02671 866 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 HOXC6P09630 235 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 HLA-DPA1P20036 260 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 EPHX2P34913 555 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 EPHB3P54753 998 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 RASSF7Q02833 373 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TWF1Q12792 350 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PDIK1LQ8N165 341 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 EXD1Q8NHP7 514 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CFAP61Q8NHU2 1237 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 STAMQ92783 540 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 ZFYVE19Q96K21 471 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 BRIP1Q9BX63 1249 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 NMRK1Q9NWW6 199 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 KPNA7A9QM74 516 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 SRGAP2O75044 1071 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 CTSHP09668 335 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PYGBP11216 843 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 ODC1P11926 461 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 FLOT2Q14254 428 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PLCL1Q15111 1095 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PTPROQ16827 1216 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 PLA2G4CQ9UP65 541 aa6.51□□□□□ -1.37
SCN1A-217ENST00000637988 TARSL2A2RTX5 802 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 RASSF10A6NK89 507 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 CLIC2O15247 247 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 BUB1O43683 1085 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 XYLBO75191 536 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SUPT3HO75486 399 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MT-ND3P03897 115 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TRPC1P48995 793 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 HSP90AA5PQ58FG0 334 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 HEATR6Q6AI08 1181 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TMEM35BQ8NCS4 154 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PPHLN1Q8NEY8 458 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MRPS31Q92665 395 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 RBM41Q96IZ5 413 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SIK2Q9H0K1 926 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 STARD7Q9NQZ5 370 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 CACNA2D2Q9NY47 1150 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SLC9A2Q9UBY0 812 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 A0A1B0GUA9 196 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 H2AFYO75367 372 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 BMP10O95393 424 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MOCS2O96007 188 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 KRT7P08729 469 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 HPGDP15428 266 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 VEGFAP15692 232 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ADKP55263 362 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TGM3Q08188 693 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 SWSAP1Q6NVH7 229 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ACAD11Q709F0 780 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PYROXD1Q8WU10 500 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ADARB2Q9NS39 739 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TXLNGQ9NUQ3 528 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PCDHA6Q9UN73 950 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PCDHA8Q9Y5H6 950 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PRAMEF22A3QJZ6 481 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 OPLAHO14841 1288 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PAX3P23760 479 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ADORA2BP29275 332 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 THPOP40225 353 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 GCLCP48506 637 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 HMGCS2P54868 508 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TXNRD1Q16881 649 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ANGEL2Q5VTE6 544 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 NOTUMQ6P988 496 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TEX13BQ9BXU2 312 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 EXO5Q9H790 373 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 STK38LQ9Y2H1 464 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MYO9BQ13459 2157 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 FAM170AA1A519 330 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 M0QYV0 167 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 CHL1O00533 1208 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ANXA11P50995 505 aaKnown RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 KCNQ4P56696 695 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 PEX6Q13608 980 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 HIST2H2ACQ16777 129 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 KRT24Q2M2I5 525 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 ANKRD40Q6AI12 368 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 HIST2H2AA3Q6FI13 130 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 CEP68Q76N32 757 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 TSPYL6Q8N831 410 aa6.5□□□□□ -1.37
SCN1A-217ENST00000637988 MYCBPQ99417 103 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-217ENST00000637988 RRAGCQ9HB90 399 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms