RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.6■□□□□ 0.89
CLN6-220ENST00000637450 LYPLA2O95372 231 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 LARGE1O95461 756 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 CA8P35219 290 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 SLC11A1P49279 550 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 GIT2Q14161 759 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 AUTS2Q8WXX7 1259 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 PBXIP1Q96AQ6 731 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 EIF2AK1Q9BQI3 630 aaKnown RBP20.6■□□□□ 0.89
CLN6-220ENST00000637450 GBP3Q9H0R5 595 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 XPNPEP1Q9NQW7 623 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 PPP4R2Q9NY27 417 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 PCDHA12Q9UN75 941 aa20.6■□□□□ 0.89
CLN6-220ENST00000637450 CNTNAP2Q9UHC6 1331 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 BTBD18B2RXH4 712 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 B4GALT3O60512 393 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 DDHD2O94830 711 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 AFF1P51825 1210 aaKnown RBP20.59■□□□□ 0.89
CLN6-220ENST00000637450 SIGLEC14Q08ET2 396 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 CES5AQ6NT32 575 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 NSUN7Q8NE18 718 aaKnown RBP20.59■□□□□ 0.89
CLN6-220ENST00000637450 URGCPQ8TCY9 931 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 NECTIN4Q96NY8 510 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 MTRQ99707 1265 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 VN1R3Q9BXE9 311 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 RSAD1Q9HA92 442 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 KANSL3Q9P2N6 904 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 CDH22Q9UJ99 828 aa20.59■□□□□ 0.89
CLN6-220ENST00000637450 NCLP19338 710 aaKnown RBP20.58■□□□□ 0.89
CLN6-220ENST00000637450 PTENP60484 403 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 NHLH1Q02575 133 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 POU5F1BQ06416 359 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 MXD4Q14582 209 aaPredicted RBP20.58■□□□□ 0.89
CLN6-220ENST00000637450 PCBP1Q15365 356 aaKnown RBP eCLIP20.58■□□□□ 0.89
CLN6-220ENST00000637450 CALCRLQ16602 461 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 PTPN21Q16825 1174 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 TMEM87AQ8NBN3 555 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 SMG8Q8ND04 991 aaKnown RBP20.58■□□□□ 0.89
CLN6-220ENST00000637450 SLC22A17Q8WUG5 538 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 NR2E1Q9Y466 385 aa20.58■□□□□ 0.89
CLN6-220ENST00000637450 ZNF318Q5VUA4 2279 aa20.58■□□□□ 0.88
CLN6-220ENST00000637450 ALDH2P05091 517 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 EPCAMP16422 314 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 AXLP30530 894 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 ALYREFQ86V81 257 aaKnown RBP20.57■□□□□ 0.88
CLN6-220ENST00000637450 IFNLR1Q8IU57 520 aaPredicted RBP20.57■□□□□ 0.88
CLN6-220ENST00000637450 CNNM3Q8NE01 707 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 ASIC4Q96FT7 647 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 TMEM175Q9BSA9 504 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 POMKQ9H5K3 350 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 TTC12Q9H892 705 aaPredicted RBP20.57■□□□□ 0.88
CLN6-220ENST00000637450 UBN1Q9NPG3 1134 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 ANKEF1Q9NU02 776 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 DZANK1Q9NVP4 752 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 STK39Q9UEW8 545 aa20.57■□□□□ 0.88
CLN6-220ENST00000637450 WNT7AO00755 349 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 TSPAN1O60635 241 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 JAK2O60674 1132 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 DGAT1O75907 488 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 ERLIN2O94905 339 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 SP100P23497 879 aaPredicted RBP20.56■□□□□ 0.88
CLN6-220ENST00000637450 MTHFRP42898 656 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 NEK4P51957 841 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 PTPN14Q15678 1187 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 DIS3L2Q8IYB7 885 aaKnown RBP20.56■□□□□ 0.88
CLN6-220ENST00000637450 C12orf76Q8N812 135 aaPredicted RBP20.56■□□□□ 0.88
CLN6-220ENST00000637450 RIPOR3Q96MK2 946 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 FAM193BQ96PV7 902 aaPredicted RBP20.56■□□□□ 0.88
CLN6-220ENST00000637450 MTMR9Q96QG7 549 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 FAN1Q9Y2M0 1017 aa20.56■□□□□ 0.88
CLN6-220ENST00000637450 NRP1O14786 923 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 NEMFO60524 1076 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 POMCP01189 267 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 ITGA4P13612 1032 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 ARL2P36404 184 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 TXKP42681 527 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 TFDP1Q14186 410 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 RARS2Q5T160 578 aaKnown RBP20.55■□□□□ 0.88
CLN6-220ENST00000637450 KANK3Q6NY19 840 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 PPFIBP1Q86W92 1011 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 FBXL6Q8N531 539 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 ASAP3Q8TDY4 903 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 CCDC51Q96ER9 411 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 EIF2AQ9BY44 585 aaKnown RBP20.55■□□□□ 0.88
CLN6-220ENST00000637450 RNF39Q9H2S5 420 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 TSHZ2Q9NRE2 1034 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 IPPQ9Y573 584 aa20.55■□□□□ 0.88
CLN6-220ENST00000637450 C2CD4DB7Z1M9 353 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 INO80B-WBP1J3KQ70 363 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 INPPL1O15357 1258 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 LILRB3O75022 631 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 WEE2P0C1S8 567 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 XRCC6P12956 609 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN6-220ENST00000637450 RARRES1P49788 294 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 NCBP1Q09161 790 aaKnown RBP20.54■□□□□ 0.88
CLN6-220ENST00000637450 CAPSQ13938 189 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 TRIM29Q14134 588 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 AMHR2Q16671 573 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 ATAT1Q5SQI0 421 aa20.54■□□□□ 0.88
CLN6-220ENST00000637450 IER5LQ5T953 404 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms