RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 ARP10275 920 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 SREBF1P36956 1147 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 KRT76Q01546 638 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 TMEM119Q4V9L6 283 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 CASC4Q6P4E1 433 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 FBXL13Q8NEE6 735 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 ARHGEF2Q92974 986 aaKnown RBP13.78□□□□□ -0.2
MSH6-215ENST00000622629 THOC1Q96FV9 657 aaKnown RBP13.78□□□□□ -0.2
MSH6-215ENST00000622629 RSRC1Q96IZ7 334 aaKnown RBP13.78□□□□□ -0.2
MSH6-215ENST00000622629 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.78□□□□□ -0.2
MSH6-215ENST00000622629 TTC7AQ9ULT0 858 aaPredicted RBP13.78□□□□□ -0.2
MSH6-215ENST00000622629 ZHX2Q9Y6X8 837 aa13.78□□□□□ -0.2
MSH6-215ENST00000622629 ZBTB39O15060 712 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 FGFR4P22455 802 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 POLR2BP30876 1174 aaKnown RBP13.77□□□□□ -0.2
MSH6-215ENST00000622629 ADCY2Q08462 1091 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 KCNA1Q09470 495 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 LRRC14Q15048 493 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 EPC2Q52LR7 807 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 MUM1L1Q5H9M0 696 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 HP1BP3Q5SSJ5 553 aaPredicted RBP13.77□□□□□ -0.2
MSH6-215ENST00000622629 PPP1R16BQ96T49 567 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 THAP2Q9H0W7 228 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 PIM2Q9P1W9 311 aa13.77□□□□□ -0.2
MSH6-215ENST00000622629 CHRNA3P32297 505 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 LSP1P33241 339 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 MAN1A1P33908 653 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 MDH1P40925 334 aaKnown RBP13.77□□□□□ -0.21
MSH6-215ENST00000622629 CASP5P51878 434 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 DDR1Q08345 913 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 THNSL1Q8IYQ7 743 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 BBOF1Q8ND07 529 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 CCT8L2Q96SF2 557 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 POLR3CQ9BUI4 534 aaPredicted RBP13.77□□□□□ -0.21
MSH6-215ENST00000622629 KCNH7Q9NS40 1196 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 BCL9LQ86UU0 1499 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.77□□□□□ -0.21
MSH6-215ENST00000622629 HDLBPQ00341 1268 aaKnown RBP13.77□□□□□ -0.21
MSH6-215ENST00000622629 RASA3Q14644 834 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 COG2Q14746 738 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 APOBEC3HQ6NTF7 200 aaKnown RBP13.77□□□□□ -0.21
MSH6-215ENST00000622629 LRRC55Q6ZSA7 311 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 MCPH1Q8NEM0 835 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 P3H4Q92791 437 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 SMC6Q96SB8 1091 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 KIFC3Q9BVG8 833 aa13.77□□□□□ -0.21
MSH6-215ENST00000622629 MYBL2P10244 700 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 KCTD19Q17RG1 926 aaPredicted RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 KIAA1755Q5JYT7 1200 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 APTXQ7Z2E3 356 aaKnown RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 TRIM6Q9C030 488 aaPredicted RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 ZNF70Q9UC06 446 aaPredicted RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 PCDHAC2Q9Y5I4 1007 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 CERS5Q8N5B7 392 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 SHISA4Q96DD7 197 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 WRNIP1Q96S55 665 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 CALN1Q9BXU9 219 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 GPRC5CQ9NQ84 441 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 MYO3BQ8WXR4 1341 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 EXOC1LA0A1B0GW35 172 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 MAP2K2P36507 400 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 RUBCNQ92622 972 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 DNAJC19Q96DA6 116 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 CLGNO14967 610 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 COMTP21964 271 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 AMPD2Q01433 879 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 BAATQ14032 418 aaPredicted RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 ANKRD20A3Q5VUR7 823 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 SRRM1Q8IYB3 904 aaKnown RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 JPH2Q9BR39 696 aaPredicted RBP13.76□□□□□ -0.21
MSH6-215ENST00000622629 ISCUQ9H1K1 167 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 PCDHA10Q9Y5I2 948 aa13.76□□□□□ -0.21
MSH6-215ENST00000622629 FAM187AA6NFU0 413 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 TMEM253P0C7T8 217 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 SCP2P22307 547 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 CLNS1AP54105 237 aaKnown RBP13.75□□□□□ -0.21
MSH6-215ENST00000622629 YARSP54577 528 aaKnown RBP13.75□□□□□ -0.21
MSH6-215ENST00000622629 SNRNP35Q16560 246 aaKnown RBP13.75□□□□□ -0.21
MSH6-215ENST00000622629 FOXR1Q6PIV2 292 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 NLRP4Q96MN2 994 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 MXRA8Q9BRK3 442 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 CBWD1Q9BRT8 395 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 MKNK1Q9BUB5 465 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 UNC45AQ9H3U1 944 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 EML1O00423 815 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 CLDN3O15551 220 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 HSD17B3P37058 310 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 YWHAEP62258 255 aaKnown RBP13.75□□□□□ -0.21
MSH6-215ENST00000622629 KCNMA1Q12791 1236 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 PPP2R5DQ14738 602 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 ARMC9Q7Z3E5 817 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 NSUN6Q8TEA1 469 aaKnown RBP13.75□□□□□ -0.21
MSH6-215ENST00000622629 KLHL29Q96CT2 875 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 ATP6V0A4Q9HBG4 840 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.75□□□□□ -0.21
MSH6-215ENST00000622629 H7C0C1 242 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 EIF3DO15371 548 aaKnown RBP eCLIP13.75□□□□□ -0.21
MSH6-215ENST00000622629 RTN2O75298 545 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 FAM153BP0C7A2 387 aa13.75□□□□□ -0.21
MSH6-215ENST00000622629 ITGA4P13612 1032 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms