RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TPM2P07951 284 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 EFNA5P52803 228 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 PRMT2P55345 433 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 GSDMDP57764 484 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 PTENP60484 403 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 LRMPQ12912 555 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 NFRKBQ6P4R8 1299 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 IFNLR1Q8IU57 520 aaPredicted RBP15.6■□□□□ 0.09
USP39-220ENST00000613444 XXYLT1Q8NBI6 393 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 ZNF668Q96K58 619 aaPredicted RBP15.6■□□□□ 0.09
USP39-220ENST00000613444 FBXL18Q96ME1 805 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 KATNAL1Q9BW62 490 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 HAPLN2Q9GZV7 340 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 XPNPEP3Q9NQH7 507 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 SIK3Q9Y2K2 1263 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 FRMD4BQ9Y2L6 1034 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 PES1O00541 588 aaKnown RBP15.59■□□□□ 0.09
USP39-220ENST00000613444 EXOC3O60645 756 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 GYPCP04921 128 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 GARTP22102 1010 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 TMOD1P28289 359 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 CST5P28325 142 aaPredicted RBP15.59■□□□□ 0.09
USP39-220ENST00000613444 KLK7P49862 253 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 STRN3Q13033 797 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 ARHGEF6Q15052 776 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 CCDC155Q8N6L0 562 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 SLAIN1Q8ND83 568 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 NLRP4Q96MN2 994 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 FZD8Q9H461 694 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 MINDY3Q9H8M7 445 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 RNF225M0QZC1 329 aaPredicted RBP15.59■□□□□ 0.09
USP39-220ENST00000613444 MAPK13O15264 365 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 VTNP04004 478 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 INHAP05111 366 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 IQCF3P0C7M6 154 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 CHMP4BP1P59074 171 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 GOLGA8FQ08AF8 430 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 GOLGA8DPQ0D2H9 430 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 KCNH2Q12809 1159 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 TFDP1Q14186 410 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 SYCP1Q15431 976 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 CXCL17Q6UXB2 119 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 TC2NQ8N9U0 490 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 MTG1Q9BT17 334 aaPredicted RBP15.59■□□□□ 0.09
USP39-220ENST00000613444 TARS2Q9BW92 718 aaKnown RBP15.59■□□□□ 0.09
USP39-220ENST00000613444 C2orf40Q9H1Z8 148 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 SPC25Q9HBM1 224 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 HDAC6Q9UBN7 1215 aa15.59■□□□□ 0.09
USP39-220ENST00000613444 DDX20Q9UHI6 824 aaKnown RBP15.59■□□□□ 0.09
USP39-220ENST00000613444 LIG4P49917 911 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 MBTD1Q05BQ5 628 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 PPP2R3AQ06190 1150 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 RBL2Q08999 1139 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 KCNMA1Q12791 1236 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 FKBP15Q5T1M5 1219 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 ZBTB8OSQ8IWT0 167 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 RDH13Q8NBN7 331 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 TTYH3Q9C0H2 523 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 WBP1LQ9NX94 342 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 AKT3Q9Y243 479 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 PTCH2Q9Y6C5 1203 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 A0A087WZ62 844 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 SMIM35A0A1B0GVV1 85 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 ADRB2P07550 413 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 FXR1P51114 621 aaKnown RBP eCLIP15.58■□□□□ 0.08
USP39-220ENST00000613444 ZNF200P98182 395 aaPredicted RBP15.58■□□□□ 0.08
USP39-220ENST00000613444 ZPBP2Q6X784 338 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 RUFY4Q6ZNE9 571 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 CBWD2Q8IUF1 395 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 CCDC150Q8NCX0 1101 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 PLEKHO2Q8TD55 490 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 POMGNT1Q8WZA1 660 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 SAAL1Q96ER3 474 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 BICD1Q96G01 975 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 ZBTB45Q96K62 511 aaPredicted RBP15.58■□□□□ 0.08
USP39-220ENST00000613444 FDXACB1Q9BRP7 624 aaPredicted RBP15.58■□□□□ 0.08
USP39-220ENST00000613444 ZKSCAN5Q9Y2L8 839 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 TRIM17Q9Y577 477 aa15.58■□□□□ 0.08
USP39-220ENST00000613444 GOLGA8IPA6NC78 632 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 GOLGA8JA6NMD2 632 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 ABLIM1O14639 778 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 TREHO43280 583 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 PRKCBP05771 671 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 GRK4P32298 578 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 GPC3P51654 580 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 CCZ1BP86790 482 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 CCZ1P86791 482 aaPredicted RBP15.57■□□□□ 0.08
USP39-220ENST00000613444 BFSP1Q12934 665 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 MAPK6Q16659 721 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 C1orf220Q5T0J3 134 aa15.57■□□□□ 0.08
USP39-220ENST00000613444 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.57■□□□□ 0.087e-6■■□□□ 12.1
USP39-220ENST00000613444 A0A0B4J269 797 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 ACKR2O00590 384 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 AFPP02771 609 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 ASGR1P07306 291 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 ADKP55263 362 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 C1QTNF8P60827 252 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 KCNA10Q16322 511 aa15.56■□□□□ 0.08
USP39-220ENST00000613444 SNRNP35Q16560 246 aaKnown RBP15.56■□□□□ 0.08
USP39-220ENST00000613444 AMHR2Q16671 573 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms