RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 CNTNAP2Q9UHC6 1331 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 CPLX1O14810 134 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 LARGE1O95461 756 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 ALDH2P05091 517 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 ASGR2P07307 311 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 QARSP47897 775 aaKnown RBP14□□□□□ -0.17
TRIM28-212ENST00000597995 PPP2R5CQ13362 524 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 TMC5Q6UXY8 1006 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 AGMOQ6ZNB7 445 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 OTOP3Q7RTS5 596 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 KRT25Q7Z3Z0 450 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 ZNF280BQ86YH2 543 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 SLC7A3Q8WY07 619 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 ACSF2Q96CM8 615 aaPredicted RBP14□□□□□ -0.17
TRIM28-212ENST00000597995 KLHL5Q96PQ7 755 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 VN1R3Q9BXE9 311 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 DHX33Q9H6R0 707 aaKnown RBP14□□□□□ -0.17
TRIM28-212ENST00000597995 GJB4Q9NTQ9 266 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 COL4A3BPQ9Y5P4 624 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 CFAP54Q96N23 3096 aa14□□□□□ -0.17
TRIM28-212ENST00000597995 EML1O00423 815 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 GAS2O43903 313 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 LILRB3O75022 631 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 DDHD2O94830 711 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 P4HBP07237 508 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 CNPP09543 421 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 KLRC2P26717 231 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 RFC5P40937 340 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 NBL1P41271 181 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 CLCN4P51793 760 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 ME3Q16798 604 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 PLA2G4FQ68DD2 849 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 CPLX2Q6PUV4 134 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 C15orf39Q6ZRI6 1047 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 CCDC149Q6ZUS6 474 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 CNNM3Q8NE01 707 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 PRPF31Q8WWY3 499 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 PSPC1Q8WXF1 523 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 SNX27Q96L92 541 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 FAM193BQ96PV7 902 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 GBP3Q9H0R5 595 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 SLKQ9H2G2 1235 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 MFSD1Q9H3U5 465 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 SMOC2Q9H3U7 446 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 RSAD1Q9HA92 442 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 MRPL17Q9NRX2 175 aaKnown RBP13.99□□□□□ -0.17
TRIM28-212ENST00000597995 KCNJ14Q9UNX9 436 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 SSX2IPQ9Y2D8 614 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 FAN1Q9Y2M0 1017 aa13.99□□□□□ -0.17
TRIM28-212ENST00000597995 PLXNA3P51805 1871 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 TBX3O15119 743 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 ASAP2O43150 1006 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 B4GALT3O60512 393 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 GCFC2P16383 781 aaKnown RBP13.98□□□□□ -0.17
TRIM28-212ENST00000597995 NCLP19338 710 aaKnown RBP13.98□□□□□ -0.17
TRIM28-212ENST00000597995 HOXA11P31270 313 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-212ENST00000597995 NPEPPSP55786 919 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 PCBP1Q15365 356 aaKnown RBP eCLIP13.98□□□□□ -0.17
TRIM28-212ENST00000597995 INF2Q27J81 1249 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 PPP4R3AQ6IN85 833 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 CYP26C1Q6V0L0 522 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 C4orf19Q8IY42 314 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 NECAB1Q8N987 351 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 CMASQ8NFW8 434 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-212ENST00000597995 TCP11Q8WWU5 503 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 CEP170P1Q96L14 293 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 PHF20Q9BVI0 1012 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 RHOBTB2Q9BYZ6 727 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 KCNMB3Q9NPA1 279 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 UBN1Q9NPG3 1134 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 DPP7Q9UHL4 492 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 VAV3Q9UKW4 847 aa13.98□□□□□ -0.17
TRIM28-212ENST00000597995 DENND4AQ7Z401 1863 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 STK36Q9NRP7 1315 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 RIF1Q5UIP0 2472 aaKnown RBP13.97□□□□□ -0.17
TRIM28-212ENST00000597995 SPDYE4A6NLX3 237 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 NRP1O14786 923 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 SLC37A4O43826 429 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 SOD2P04179 222 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 SRGAP2CP0DJJ0 459 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 FDPSP14324 419 aaKnown RBP13.97□□□□□ -0.17
TRIM28-212ENST00000597995 LAMTOR4Q0VGL1 99 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 ST3GAL1Q11201 340 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 TDGQ13569 410 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 EPHA7Q15375 998 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 LETM2Q2VYF4 491 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 UBXN11Q5T124 520 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 OTUD6AQ7L8S5 288 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 NEK8Q86SG6 692 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 ZNF579Q8NAF0 562 aaKnown RBP13.97□□□□□ -0.17
TRIM28-212ENST00000597995 TMEM143Q96AN5 459 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 NAP1L4Q99733 375 aaKnown RBP13.97□□□□□ -0.17
TRIM28-212ENST00000597995 MINDY3Q9H8M7 445 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 IGSF9Q9P2J2 1179 aa13.97□□□□□ -0.17
TRIM28-212ENST00000597995 CCDC194A0A1B0GVG4 234 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 INPPL1O15357 1258 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 C1RP00736 705 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 POMCP01189 267 aa13.96□□□□□ -0.17
TRIM28-212ENST00000597995 SSBP05455 408 aaKnown RBP eCLIP13.96□□□□□ -0.17
TRIM28-212ENST00000597995 URODP06132 367 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms