RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 SMARCE1Q969G3 411 aa13.35□□□□□ -0.27
SHKBP1-213ENST00000597325 MSLNLQ96KJ4 702 aa13.35□□□□□ -0.27
SHKBP1-213ENST00000597325 CEP170P1Q96L14 293 aa13.35□□□□□ -0.27
SHKBP1-213ENST00000597325 MTG1Q9BT17 334 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-213ENST00000597325 KCND2Q9NZV8 630 aa13.35□□□□□ -0.27
SHKBP1-213ENST00000597325 H3BRB1 525 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 USO1O60763 962 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 EFCAB14O75071 495 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 TBCAO75347 108 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 F2P00734 622 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 PRR29P0C7W0 189 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 PTPN11Q06124 597 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 RBL2Q08999 1139 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 PLCB4Q15147 1175 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 MTERF2Q49AM1 385 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 FAM47CQ5HY64 1035 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 PADI6Q6TGC4 694 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 ANO5Q75V66 913 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 C16orf70Q9BSU1 422 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 GZF1Q9H116 711 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 TUT1Q9H6E5 874 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 CYP26B1Q9NR63 512 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 CD207Q9UJ71 328 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 PPME1Q9Y570 386 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 WDR81Q562E7 1941 aa13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 MYH9P35579 1960 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 ANKRD11Q6UB99 2663 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-213ENST00000597325 TMEM150BA6NC51 233 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 MYMKA6NI61 221 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 ZBTB39O15060 712 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 HBP1O60381 514 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 PARNO95453 639 aaKnown RBP13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 SELPP16109 830 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 CYP11B2P19099 503 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 GTF2F1P35269 517 aaKnown RBP eCLIP13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 RFC5P40937 340 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 POLGP54098 1239 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 CHMP4BP1P59074 171 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 CUL4BQ13620 913 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 MFSD10Q14728 455 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 ZSCAN23Q3MJ62 389 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 TMEM192Q8IY95 271 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 EXOC8Q8IYI6 725 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 DHX38Q92620 1227 aaKnown RBP13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 DDX12PQ92771 950 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 RIPOR3Q96MK2 946 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 C7orf25Q9BPX7 421 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 RUSC1Q9BVN2 902 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 TIPINQ9BVW5 301 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 NIFKQ9BYG3 293 aaKnown RBP13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 TRIM9Q9C026 710 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 BLZF1Q9H2G9 400 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 ATP6V0A4Q9HBG4 840 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 RMND1Q9NWS8 449 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 RALGAPA2Q2PPJ7 1873 aa13.33□□□□□ -0.28
SHKBP1-213ENST00000597325 COL1A2P08123 1366 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 SYCE3A1L190 88 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 LINC01565O15544 149 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 DGAT1O75907 488 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 STBD1O95210 358 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 IDEP14735 1019 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 ATP4AP20648 1035 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 PSEN2P49810 448 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 NPEPPSP55786 919 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 RAD51AP2Q09MP3 1159 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 TBC1D8BQ0IIM8 1120 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 DPYDQ12882 1025 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 IKBKEQ14164 716 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 KIAA0753Q2KHM9 967 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 ZNF484Q5JVG2 852 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 RINT1Q6NUQ1 792 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 SASS6Q6UVJ0 657 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 LRRC8DQ7L1W4 858 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 DYMQ7RTS9 669 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 CCDC65Q8IXS2 484 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 MCPH1Q8NEM0 835 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 SLC7A3Q8WY07 619 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 ERCC4Q92889 916 aaPredicted RBP13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 MTRQ99707 1265 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 JPH2Q9BR39 696 aaPredicted RBP13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 ZHX3Q9H4I2 956 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 EXOC1Q9NV70 894 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 KIAA1468Q9P260 1216 aa13.32□□□□□ -0.28
SHKBP1-213ENST00000597325 SPEGQ15772 3267 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 FAM13AO94988 1023 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 RPN1P04843 607 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 GUCY2CP25092 1073 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 CASP1P29466 404 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 PPFIA1Q13136 1202 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 ADAM15Q13444 863 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 PUM1Q14671 1186 aaKnown RBP eCLIP13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 EMC2Q15006 297 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 CNNM4Q6P4Q7 775 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 TRAF7Q6Q0C0 670 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 RBM43Q6ZSC3 357 aaKnown RBP13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 C1orf186Q6ZWK4 172 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 UNC13DQ70J99 1090 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 TMEM105Q8N8V8 129 aa13.31□□□□□ -0.28
SHKBP1-213ENST00000597325 SMRP1Q8NCR6 262 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms