RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 CNTNAP2Q9UHC6 1331 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 ASAP2O43150 1006 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 B4GALT3O60512 393 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 IER5LQ5T953 404 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 ZNF280BQ86YH2 543 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 DYDC2Q96IM9 177 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 RIPOR3Q96MK2 946 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 VN1R3Q9BXE9 311 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 GBP3Q9H0R5 595 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 RSAD1Q9HA92 442 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 STK39Q9UEW8 545 aa26.71■■□□□ 1.87
LSM4-202ENST00000593564 DTNBO60941 627 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 BAG4O95429 457 aaKnown RBP26.7■■□□□ 1.86
LSM4-202ENST00000593564 ANAPC15P60006 121 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 ANKRD1Q15327 319 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 UBXN11Q5T124 520 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 RARS2Q5T160 578 aaKnown RBP26.7■■□□□ 1.86
LSM4-202ENST00000593564 ZBTB33Q86T24 672 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 FERMT3Q86UX7 667 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 RNF149Q8NC42 400 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 SLC22A17Q8WUG5 538 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 BMP2KQ9NSY1 1161 aaPredicted RBP26.7■■□□□ 1.86
LSM4-202ENST00000593564 KANSL3Q9P2N6 904 aa26.7■■□□□ 1.86
LSM4-202ENST00000593564 C2CD4DB7Z1M9 353 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 EPCAMP16422 314 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 PTPN5P54829 565 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 CTTNQ14247 550 aaKnown RBP26.69■■□□□ 1.86
LSM4-202ENST00000593564 PTPN14Q15678 1187 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 XKR9Q5GH70 373 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 KIAA1841Q6NSI8 718 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 PPFIBP1Q86W92 1011 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 C12orf76Q8N812 135 aaPredicted RBP26.69■■□□□ 1.86
LSM4-202ENST00000593564 TNFRSF25Q93038 417 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 MTRQ99707 1265 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 TMEM175Q9BSA9 504 aa26.69■■□□□ 1.86
LSM4-202ENST00000593564 FAM205CA6NFA0 338 aa26.68■■□□□ 1.86
LSM4-202ENST00000593564 FDPSP14324 419 aaKnown RBP26.68■■□□□ 1.86
LSM4-202ENST00000593564 NCLP19338 710 aaKnown RBP26.68■■□□□ 1.86
LSM4-202ENST00000593564 KRT2P35908 639 aa26.68■■□□□ 1.86
LSM4-202ENST00000593564 AFF1P51825 1210 aaKnown RBP26.68■■□□□ 1.86
LSM4-202ENST00000593564 CYP4A11Q02928 519 aa26.68■■□□□ 1.86
LSM4-202ENST00000593564 NR5A1Q13285 461 aa26.68■■□□□ 1.86
LSM4-202ENST00000593564 PCBP1Q15365 356 aaKnown RBP eCLIP26.68■■□□□ 1.86
LSM4-202ENST00000593564 KREMEN2Q8NCW0 462 aa26.68■■□□□ 1.86
LSM4-202ENST00000593564 BRMS1Q9HCU9 246 aa26.68■■□□□ 1.86
LSM4-202ENST00000593564 ZBTB39O15060 712 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 DDHD2O94830 711 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 SLITRK3O94933 977 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 WEE2P0C1S8 567 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 AK2P54819 239 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 ATAT1Q5SQI0 421 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 TPH2Q8IWU9 490 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 CNNM3Q8NE01 707 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 FAM193BQ96PV7 902 aaPredicted RBP26.67■■□□□ 1.86
LSM4-202ENST00000593564 UBN1Q9NPG3 1134 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 XPNPEP1Q9NQW7 623 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 SORCS3Q9UPU3 1222 aa26.67■■□□□ 1.86
LSM4-202ENST00000593564 ERLIN2O94905 339 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 ALDH2P05091 517 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 PTENP60484 403 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 MTMR3Q13615 1198 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 MXD4Q14582 209 aaPredicted RBP26.66■■□□□ 1.86
LSM4-202ENST00000593564 CABP7Q86V35 215 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 UBALD2Q8IYN6 164 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 CCDC51Q96ER9 411 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 EMILIN2Q9BXX0 1053 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 FAN1Q9Y2M0 1017 aa26.66■■□□□ 1.86
LSM4-202ENST00000593564 LYPLA2O95372 231 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 POMCP01189 267 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 AXLP30530 894 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 VCPP55072 806 aaKnown RBP26.65■■□□□ 1.86
LSM4-202ENST00000593564 KANK3Q6NY19 840 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 IFNLR1Q8IU57 520 aaPredicted RBP26.65■■□□□ 1.86
LSM4-202ENST00000593564 ZDHHC14Q8IZN3 488 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 TDRD5Q8NAT2 981 aaKnown RBP26.65■■□□□ 1.86
LSM4-202ENST00000593564 SMG8Q8ND04 991 aaKnown RBP26.65■■□□□ 1.86
LSM4-202ENST00000593564 HSD17B14Q9BPX1 270 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 EIF2AK1Q9BQI3 630 aaKnown RBP26.65■■□□□ 1.86
LSM4-202ENST00000593564 USTQ9Y2C2 406 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 KMT2EQ8IZD2 1858 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 CACNA1HO95180 2353 aa26.65■■□□□ 1.86
LSM4-202ENST00000593564 NRP1O14786 923 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 INPPL1O15357 1258 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 TSPAN1O60635 241 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 LILRB3O75022 631 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 AVPR2P30518 371 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 POU5F1BQ06416 359 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 TCF15Q12870 199 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 TFDP1Q14186 410 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 NECAB1Q8N987 351 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 GTF3C6Q969F1 213 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 KLHL5Q96PQ7 755 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 SFXN1Q9H9B4 322 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 DBR1Q9UK59 544 aaKnown RBP26.64■■□□□ 1.86
LSM4-202ENST00000593564 PCDHA12Q9UN75 941 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 IPPQ9Y573 584 aa26.64■■□□□ 1.86
LSM4-202ENST00000593564 ITGA4P13612 1032 aa26.63■■□□□ 1.85
LSM4-202ENST00000593564 CALCRLQ16602 461 aa26.63■■□□□ 1.85
LSM4-202ENST00000593564 ME3Q16798 604 aa26.63■■□□□ 1.85
LSM4-202ENST00000593564 NOTUMQ6P988 496 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms