RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CD4P01730 458 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 TMEM132DQ14C87 1099 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 CLEC17AQ6ZS10 378 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 MAIP1Q8WWC4 291 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 BRI3BPQ8WY22 251 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 HPS3Q969F9 1004 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 FSD2A1L4K1 749 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 E7EVH7 732 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 MEIS2O14770 477 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 HOXA2O43364 376 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 IL18RAPO95256 599 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 BEX3Q00994 111 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 CALCOCO2Q13137 446 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 SKIV2LQ15477 1246 aaKnown RBP10.59□□□□□ -0.71
LIG3-216ENST00000593099 DCAF4L1Q3SXM0 396 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 ZNF394Q53GI3 561 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 ZNF365Q70YC5 407 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 FRMD5Q7Z6J6 570 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 FBXL13Q8NEE6 735 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 MAF1Q9H063 256 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 CEP104O60308 925 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 TLR2O60603 784 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 MYZAPP0CAP1 466 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CPB1P15086 417 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 DPYDQ12882 1025 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CLUL1Q15846 466 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CELF3Q5SZQ8 465 aaKnown RBP10.58□□□□□ -0.72
LIG3-216ENST00000593099 IFNL1Q8IU54 200 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 FAM133AQ8N9E0 248 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CCDC26Q8TAB7 109 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 ZNF653Q96CK0 615 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 RAB20Q9NX57 234 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 AGAP1Q9UPQ3 857 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 BTAF1O14981 1849 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CLTAP09496 248 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 TRIM49P0CI25 452 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 TRIM49CP0CI26 452 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 GRIN1Q05586 938 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 DNAJC24Q6P3W2 148 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 NKX2-3Q8TAU0 364 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 TSNARE1Q96NA8 513 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 PIDD1Q9HB75 910 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 AAASQ9NRG9 546 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 LGALS16A8MUM7 142 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 NPTXRO95502 500 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 ENOSF1Q7L5Y1 443 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 OTOP1Q7RTM1 612 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 DAAM2Q86T65 1068 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 MAP7D3Q8IWC1 876 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 KIAA1524Q8TCG1 905 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 RUSC1Q9BVN2 902 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 MRPL47Q9HD33 250 aaKnown RBP10.58□□□□□ -0.72
LIG3-216ENST00000593099 DBR1Q9UK59 544 aaKnown RBP10.58□□□□□ -0.72
LIG3-216ENST00000593099 UBIAD1Q9Y5Z9 338 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 EMSYQ7Z589 1322 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 A8MXQ7 604 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 SLC16A3O15427 465 aaKnown RBP10.58□□□□□ -0.72
LIG3-216ENST00000593099 PGK1P00558 417 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 LGALS2P05162 132 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 MYBP10242 640 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 TUBB4BP68371 445 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 STK4Q13043 487 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 PPP2R5CQ13362 524 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 ZC2HC1CQ53FD0 456 aaPredicted RBP10.58□□□□□ -0.72
LIG3-216ENST00000593099 NFRKBQ6P4R8 1299 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CXCL17Q6UXB2 119 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 TMEM35BQ8NCS4 154 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 SLAIN1Q8ND83 568 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 CCDC77Q9BR77 488 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 SENP6Q9GZR1 1112 aaPredicted RBP10.58□□□□□ -0.72
LIG3-216ENST00000593099 GPRC5CQ9NQ84 441 aa10.58□□□□□ -0.72
LIG3-216ENST00000593099 LOC102724159A0A0B4J2E5 919 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 IGKV6D-41A0A0C4DH26 115 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 A6NJR5 290 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 VTNP04004 478 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 PWP2Q15269 919 aaKnown RBP10.57□□□□□ -0.72
LIG3-216ENST00000593099 EDRF1Q3B7T1 1238 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 CCDC14Q49A88 953 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 TMEM270Q6UE05 265 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 PPP1R12CQ9BZL4 782 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 FAM107BQ9H098 131 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 PORCNQ9H237 461 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 PLIN4Q96Q06 1357 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 ATP1A3P13637 1013 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 VEPH1Q14D04 833 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 SH3D19Q5HYK7 790 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 AP1ARQ63HQ0 302 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 ERICH1Q86X53 443 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 ADSSL1Q8N142 457 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 TNIP3Q96KP6 325 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 HAUS4Q9H6D7 363 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 TBX20Q9UMR3 447 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 SNRNP35Q16560 246 aaKnown RBP10.57□□□□□ -0.72
LIG3-216ENST00000593099 ANKRD40Q6AI12 368 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 TRIM58Q8NG06 486 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 MTRF1LQ9UGC7 380 aaKnown RBP10.57□□□□□ -0.72
LIG3-216ENST00000593099 ACTN4O43707 911 aaKnown RBP10.57□□□□□ -0.72
LIG3-216ENST00000593099 ELNP15502 786 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 RBL2Q08999 1139 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 CFAP58Q5T655 872 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms