RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 EARS2Q5JPH6 523 aaKnown RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 RARS2Q5T160 578 aaKnown RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 KANK3Q6NY19 840 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 NEK8Q86SG6 692 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 EXOC8Q8IYI6 725 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 RNF168Q8IYW5 571 aaPredicted RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 C12orf76Q8N812 135 aaPredicted RBP13.14□□□□□ -0.31
CLIP3-204ENST00000590559 OXER1Q8TDS5 423 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 NLRP4Q96MN2 994 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 GJB4Q9NTQ9 266 aa13.14□□□□□ -0.31
CLIP3-204ENST00000590559 CNTNAP2Q9UHC6 1331 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 DMXL1Q9Y485 3027 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 ZBTB39O15060 712 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 GAS2O43903 313 aaKnown RBP13.13□□□□□ -0.31
CLIP3-204ENST00000590559 PFKFB2O60825 505 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 DKC1O60832 514 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLIP3-204ENST00000590559 PAPLNO95428 1278 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 CTDNEP1O95476 244 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 WEE2P0C1S8 567 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 NCLP19338 710 aaKnown RBP13.13□□□□□ -0.31
CLIP3-204ENST00000590559 RFC5P40937 340 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 CLCN4P51793 760 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 LAMTOR4Q0VGL1 99 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 MTMR3Q13615 1198 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 BMS1Q14692 1282 aaKnown RBP13.13□□□□□ -0.31
CLIP3-204ENST00000590559 FERMT3Q86UX7 667 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 SMG8Q8ND04 991 aaKnown RBP13.13□□□□□ -0.31
CLIP3-204ENST00000590559 SLC7A3Q8WY07 619 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 TNFRSF25Q93038 417 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 TMEM143Q96AN5 459 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 PGBD4Q96DM1 585 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 CEP170P1Q96L14 293 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 LXNQ9BS40 222 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 TMEM175Q9BSA9 504 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 SMOC2Q9H3U7 446 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 XPNPEP1Q9NQW7 623 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 STK39Q9UEW8 545 aa13.13□□□□□ -0.31
CLIP3-204ENST00000590559 DOCK8Q8NF50 2099 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 CCDC194A0A1B0GVG4 234 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 ASAP2O43150 1006 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 SLITRK3O94933 977 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 CNPP09543 421 aaKnown RBP13.12□□□□□ -0.31
CLIP3-204ENST00000590559 FDPSP14324 419 aaKnown RBP13.12□□□□□ -0.31
CLIP3-204ENST00000590559 YWHABP31946 246 aaKnown RBP13.12□□□□□ -0.31
CLIP3-204ENST00000590559 ATAT1Q5SQI0 421 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 CPLX2Q6PUV4 134 aaKnown RBP13.12□□□□□ -0.31
CLIP3-204ENST00000590559 GPR149Q86SP6 731 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 PPFIBP1Q86W92 1011 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 POTEDQ86YR6 584 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 IFNLR1Q8IU57 520 aaPredicted RBP13.12□□□□□ -0.31
CLIP3-204ENST00000590559 PSPC1Q8WXF1 523 aaKnown RBP13.12□□□□□ -0.31
CLIP3-204ENST00000590559 KLHL5Q96PQ7 755 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 RSAD1Q9HA92 442 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 TSHZ2Q9NRE2 1034 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 PDRG1Q9NUG6 133 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 MARCH5Q9NX47 278 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 RGL1Q9NZL6 768 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 KANSL3Q9P2N6 904 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 TPCN1Q9ULQ1 816 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 INPP5FQ9Y2H2 1132 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 ZNF292O60281 2723 aa13.12□□□□□ -0.31
CLIP3-204ENST00000590559 FAM205CA6NFA0 338 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 NRP1O14786 923 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 CCNT1O60563 726 aaKnown RBP13.11□□□□□ -0.31
CLIP3-204ENST00000590559 CDKL5O76039 1030 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 LYPLA2O95372 231 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 ALDH2P05091 517 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 ASGR2P07307 311 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 SRGAP2CP0DJJ0 459 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 PTENP60484 403 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 RNASELQ05823 741 aaKnown RBP13.11□□□□□ -0.31
CLIP3-204ENST00000590559 POU5F1BQ06416 359 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 DSC1Q08554 894 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 EMC2Q15006 297 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 PCBP1Q15365 356 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLIP3-204ENST00000590559 AMHR2Q16671 573 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 PIK3AP1Q6ZUJ8 805 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 COLGALT2Q8IYK4 626 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 PLCD3Q8N3E9 789 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 TMEM105Q8N8V8 129 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 URGCPQ8TCY9 931 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 TCP11Q8WWU5 503 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 DYDC2Q96IM9 177 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 NAP1L4Q99733 375 aaKnown RBP13.11□□□□□ -0.31
CLIP3-204ENST00000590559 HSD17B14Q9BPX1 270 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 RHOBTB2Q9BYZ6 727 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 GBP3Q9H0R5 595 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 RNF39Q9H2S5 420 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 ZSWIM4Q9H7M6 989 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 SFXN1Q9H9B4 322 aa13.11□□□□□ -0.31
CLIP3-204ENST00000590559 PROB1E7EW31 1015 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 GALR2O43603 387 aaPredicted RBP13.1□□□□□ -0.31
CLIP3-204ENST00000590559 TSPAN1O60635 241 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 DTNBO60941 627 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 SOD2P04179 222 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 AXLP30530 894 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 KIAA0319Q5VV43 1072 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 TMC5Q6UXY8 1006 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 C15orf39Q6ZRI6 1047 aa13.1□□□□□ -0.31
CLIP3-204ENST00000590559 OTUD6AQ7L8S5 288 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms