RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 SRGAP2O75044 1071 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 PALMO75781 387 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 PPP1R37O75864 691 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 SASH3O75995 380 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 ITGB5P18084 799 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 SLC9A1P19634 815 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 INPP5BP32019 993 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 AARSP49588 968 aaKnown RBP eCLIP11.52□□□□□ -0.57
ZNF540-208ENST00000589857 CYP2J2P51589 502 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 APBA1Q02410 837 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 ARID5AQ03989 594 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 PTK2Q05397 1052 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 PRKCZQ05513 592 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 BFSP1Q12934 665 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 IRF5Q13568 498 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 NOL9Q5SY16 702 aaKnown RBP11.52□□□□□ -0.57
ZNF540-208ENST00000589857 ARHGEF16Q5VV41 709 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 CCNI2Q6ZMN8 369 aaPredicted RBP11.52□□□□□ -0.57
ZNF540-208ENST00000589857 RNF207Q6ZRF8 634 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 NECAB2Q7Z6G3 386 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 UBE2Q1Q7Z7E8 422 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 CDAN1Q8IWY9 1227 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 SCYL3Q8IZE3 742 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 BANK1Q8NDB2 785 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 COG1Q8WTW3 980 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 KIFAP3Q92845 792 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 ATP6V0A1Q93050 837 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 NAP1L3Q99457 506 aaPredicted RBP11.52□□□□□ -0.57
ZNF540-208ENST00000589857 STRA6Q9BX79 667 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 TLR10Q9BXR5 811 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 INTS2Q9H0H0 1204 aaKnown RBP11.52□□□□□ -0.57
ZNF540-208ENST00000589857 FBXO28Q9NVF7 368 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 STIM2Q9P246 746 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 APEX2Q9UBZ4 518 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 ZNF112Q9UJU3 913 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 NAGPAQ9UK23 515 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 PNMA3Q9UL41 463 aa11.52□□□□□ -0.57
ZNF540-208ENST00000589857 A0A087X0T9 212 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 NFIBO00712 420 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 BUB1O43683 1085 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 OPA1O60313 960 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 ECM2O94769 699 aaPredicted RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 FAM228BP0C875 321 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 VCAM1P19320 739 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 ERCC3P19447 782 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 YWHABP31946 246 aaKnown RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 NOP2P46087 812 aaKnown RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 RARRES1P49788 294 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 C2orf54Q08AI8 447 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 PAK2Q13177 524 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 PGM5Q15124 567 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 GNPTABQ3T906 1256 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 NFRKBQ6P4R8 1299 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 ZNF571Q7Z3V5 609 aaPredicted RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 ANKLE1Q8NAG6 615 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 XXYLT1Q8NBI6 393 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 CTNNBL1Q8WYA6 563 aaPredicted RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 C12orf42Q96LP6 360 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 TRERF1Q96PN7 1200 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 FIZ1Q96SL8 496 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 RUFY1Q96T51 708 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 RMDN3Q96TC7 470 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 RPAP3Q9H6T3 665 aaPredicted RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 RAVER2Q9HCJ3 691 aaKnown RBP11.51□□□□□ -0.57
ZNF540-208ENST00000589857 SIX2Q9NPC8 291 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 PXMP2Q9NR77 195 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 TMOD4Q9NZQ9 345 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 DNAJC12Q9UKB3 198 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 TFR2Q9UP52 801 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 ZHX2Q9Y6X8 837 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 PFASO15067 1338 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 CENPFP49454 3210 aa11.51□□□□□ -0.57
ZNF540-208ENST00000589857 A6NNZ2 444 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 SFI1A8K8P3 1242 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 F8VZ95 297 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 CCDC188H7C350 402 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 ATP2A1O14983 1001 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 KIAA0391O15091 583 aaKnown RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 POLR3GO15318 223 aaPredicted RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 DHX15O43143 795 aaKnown RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 TMEM253P0C7T8 217 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 ACTN1P12814 892 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 TAL1P17542 331 aaPredicted RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 KLRC1P26715 233 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 GTF2H1P32780 548 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 BMP8BP34820 402 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 CASP4P49662 377 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 VAMP7P51809 220 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 BACE1P56817 501 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 RPS6P62753 249 aaKnown RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 GTF2BQ00403 316 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 MAPK7Q13164 816 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 DMP1Q13316 513 aaPredicted RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 TUBB8Q3ZCM7 444 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 ALS2CLQ60I27 953 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 CPXCR1Q8N123 301 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 ZNF280CQ8ND82 737 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 MCPH1Q8NEM0 835 aa11.5□□□□□ -0.57
ZNF540-208ENST00000589857 NSUN6Q8TEA1 469 aaKnown RBP11.5□□□□□ -0.57
ZNF540-208ENST00000589857 SPIRE2Q8WWL2 714 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms