RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CEP170P1Q96L14 293 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 NAP1L4Q99733 375 aaKnown RBP11.86□□□□□ -0.51
RFFL-209ENST00000581265 SLKQ9H2G2 1235 aaPredicted RBP11.86□□□□□ -0.51
RFFL-209ENST00000581265 DZANK1Q9NVP4 752 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 KANSL3Q9P2N6 904 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 WRAP73Q9P2S5 460 aaPredicted RBP11.86□□□□□ -0.51
RFFL-209ENST00000581265 STK39Q9UEW8 545 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 SORCS3Q9UPU3 1222 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 USTQ9Y2C2 406 aa11.86□□□□□ -0.51
RFFL-209ENST00000581265 SPTBN4Q9H254 2564 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.85□□□□□ -0.51
RFFL-209ENST00000581265 C2CD4DB7Z1M9 353 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 GAS2O43903 313 aaKnown RBP11.85□□□□□ -0.51
RFFL-209ENST00000581265 CCNT1O60563 726 aaKnown RBP11.85□□□□□ -0.51
RFFL-209ENST00000581265 DDHD2O94830 711 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 ALDH2P05091 517 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 SRGAP2CP0DJJ0 459 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 XBP1P17861 261 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 SP100P23497 879 aaPredicted RBP11.85□□□□□ -0.51
RFFL-209ENST00000581265 RFC5P40937 340 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 SLC11A1P49279 550 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 LAMTOR4Q0VGL1 99 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 KIAA1841Q6NSI8 718 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 OTUD6AQ7L8S5 288 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 PPFIBP1Q86W92 1011 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 ZDHHC14Q8IZN3 488 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 C12orf76Q8N812 135 aaPredicted RBP11.85□□□□□ -0.51
RFFL-209ENST00000581265 TMEM105Q8N8V8 129 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 TMEM87AQ8NBN3 555 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 TCP11Q8WWU5 503 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 PSPC1Q8WXF1 523 aaKnown RBP11.85□□□□□ -0.51
RFFL-209ENST00000581265 AUTS2Q8WXX7 1259 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 TMEM143Q96AN5 459 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 VN1R3Q9BXE9 311 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 MINDY3Q9H8M7 445 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 DNAJB4Q9UDY4 337 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 INPP5FQ9Y2H2 1132 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 STK36Q9NRP7 1315 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 CNTNAP2Q9UHC6 1331 aa11.85□□□□□ -0.51
RFFL-209ENST00000581265 B4GALT3O60512 393 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 PFKFB2O60825 505 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 LILRB3O75022 631 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 EPCAMP16422 314 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 YWHABP31946 246 aaKnown RBP11.84□□□□□ -0.51
RFFL-209ENST00000581265 CA8P35219 290 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 AFF1P51825 1210 aaKnown RBP11.84□□□□□ -0.51
RFFL-209ENST00000581265 SPIRE1Q08AE8 756 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 MTMR3Q13615 1198 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 PCBP1Q15365 356 aaKnown RBP eCLIP11.84□□□□□ -0.51
RFFL-209ENST00000581265 PTPN14Q15678 1187 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 UBXN11Q5T124 520 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 RARS2Q5T160 578 aaKnown RBP11.84□□□□□ -0.51
RFFL-209ENST00000581265 ASTLQ6HA08 431 aaPredicted RBP11.84□□□□□ -0.51
RFFL-209ENST00000581265 KANK3Q6NY19 840 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 PIK3AP1Q6ZUJ8 805 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 FERMT3Q86UX7 667 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 SLFN12Q8IYM2 578 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 CNNM3Q8NE01 707 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 URGCPQ8TCY9 931 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 OXER1Q8TDS5 423 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 RMDN1Q96DB5 314 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 CNTNAP3BQ96NU0 1288 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 HINFPQ9BQA5 517 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 LXNQ9BS40 222 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 TMEM175Q9BSA9 504 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 CNTNAP3Q9BZ76 1288 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 GBP3Q9H0R5 595 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 ZSWIM4Q9H7M6 989 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 RSAD1Q9HA92 442 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 GJB4Q9NTQ9 266 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 RGL1Q9NZL6 768 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 USP34Q70CQ2 3546 aa11.84□□□□□ -0.51
RFFL-209ENST00000581265 ZBTB39O15060 712 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 INPPL1O15357 1258 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 MARCH6O60337 910 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 SLITRK3O94933 977 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 BRD1O95696 1058 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 WEE2P0C1S8 567 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 NCLP19338 710 aaKnown RBP11.83□□□□□ -0.52
RFFL-209ENST00000581265 POU5F1BQ06416 359 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 PUM1Q14671 1186 aaKnown RBP eCLIP11.83□□□□□ -0.52
RFFL-209ENST00000581265 XKR9Q5GH70 373 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 GPR149Q86SP6 731 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 CABP7Q86V35 215 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 KIAA2013Q8IYS2 634 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 RNF149Q8NC42 400 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 KLHL5Q96PQ7 755 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 HSD17B14Q9BPX1 270 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 EMILIN2Q9BXX0 1053 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 UBN1Q9NPG3 1134 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 LIMD1Q9UGP4 676 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 DBR1Q9UK59 544 aaKnown RBP11.83□□□□□ -0.52
RFFL-209ENST00000581265 TPCN1Q9ULQ1 816 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 FAN1Q9Y2M0 1017 aa11.83□□□□□ -0.52
RFFL-209ENST00000581265 CFAP54Q96N23 3096 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 NRP1O14786 923 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 LYPLA2O95372 231 aa11.82□□□□□ -0.52
RFFL-209ENST00000581265 BAG4O95429 457 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms