RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF280BQ86YH2 543 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 NECAB1Q8N987 351 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 NECTIN4Q96NY8 510 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 VN1R3Q9BXE9 311 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 DNAJB4Q9UDY4 337 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 INPP5FQ9Y2H2 1132 aa19.11■□□□□ 0.65
CLN3-216ENST00000565316 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.1■□□□□ 0.65
CLN3-216ENST00000565316 NEFLP07196 543 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 CYP4A11Q02928 519 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 PTPN21Q16825 1174 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 RNF149Q8NC42 400 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 URGCPQ8TCY9 931 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 SLC22A17Q8WUG5 538 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 AUTS2Q8WXX7 1259 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 PBXIP1Q96AQ6 731 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 EIF2AK1Q9BQI3 630 aaKnown RBP19.1■□□□□ 0.65
CLN3-216ENST00000565316 BRMS1Q9HCU9 246 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 XPNPEP1Q9NQW7 623 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 DZANK1Q9NVP4 752 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 STK39Q9UEW8 545 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 NR2E1Q9Y466 385 aa19.1■□□□□ 0.65
CLN3-216ENST00000565316 LARGE1O95461 756 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 NCLP19338 710 aaKnown RBP19.09■□□□□ 0.65
CLN3-216ENST00000565316 AFF1P51825 1210 aaKnown RBP19.09■□□□□ 0.65
CLN3-216ENST00000565316 PTENP60484 403 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 POU5F1BQ06416 359 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 CES5AQ6NT32 575 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 IFNLR1Q8IU57 520 aaPredicted RBP19.09■□□□□ 0.65
CLN3-216ENST00000565316 TPH2Q8IWU9 490 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 NSUN7Q8NE18 718 aaKnown RBP19.09■□□□□ 0.65
CLN3-216ENST00000565316 ASIC4Q96FT7 647 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 MTRQ99707 1265 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 TMEM175Q9BSA9 504 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 RSAD1Q9HA92 442 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 BMP2KQ9NSY1 1161 aaPredicted RBP19.09■□□□□ 0.65
CLN3-216ENST00000565316 ANKEF1Q9NU02 776 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 KANSL3Q9P2N6 904 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 CDH22Q9UJ99 828 aa19.09■□□□□ 0.65
CLN3-216ENST00000565316 INPPL1O15357 1258 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 DDHD2O94830 711 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 MTHFRP42898 656 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 MXD4Q14582 209 aaPredicted RBP19.08■□□□□ 0.65
CLN3-216ENST00000565316 PTPN14Q15678 1187 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 SMG8Q8ND04 991 aaKnown RBP19.08■□□□□ 0.65
CLN3-216ENST00000565316 CNNM3Q8NE01 707 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 CCDC51Q96ER9 411 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 GBP3Q9H0R5 595 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 POMKQ9H5K3 350 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 UBN1Q9NPG3 1134 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 PCDHA12Q9UN75 941 aa19.08■□□□□ 0.65
CLN3-216ENST00000565316 BTBD18B2RXH4 712 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 TSPAN1O60635 241 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 LILRB3O75022 631 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 EPCAMP16422 314 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 AXLP30530 894 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 CA8P35219 290 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 CALCRLQ16602 461 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 FBXL6Q8N531 539 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 RIPOR3Q96MK2 946 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 MTMR9Q96QG7 549 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 PPP4R2Q9NY27 417 aa19.07■□□□□ 0.64
CLN3-216ENST00000565316 WNT7AO00755 349 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 DGAT1O75907 488 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 ALDH2P05091 517 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 ARL2P36404 184 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 AMHR2Q16671 573 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 RARS2Q5T160 578 aaKnown RBP19.06■□□□□ 0.64
CLN3-216ENST00000565316 KIAA1841Q6NSI8 718 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 ALYREFQ86V81 257 aaKnown RBP19.06■□□□□ 0.64
CLN3-216ENST00000565316 PPFIBP1Q86W92 1011 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 DIS3L2Q8IYB7 885 aaKnown RBP19.06■□□□□ 0.64
CLN3-216ENST00000565316 C12orf76Q8N812 135 aaPredicted RBP19.06■□□□□ 0.64
CLN3-216ENST00000565316 NFKBIZQ9BYH8 718 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 TTC12Q9H892 705 aaPredicted RBP19.06■□□□□ 0.64
CLN3-216ENST00000565316 IPPQ9Y573 584 aa19.06■□□□□ 0.64
CLN3-216ENST00000565316 C2CD4DB7Z1M9 353 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 JAK2O60674 1132 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 ERLIN2O94905 339 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 XRCC6P12956 609 aaKnown RBP eCLIP19.05■□□□□ 0.64
CLN3-216ENST00000565316 MBTD1Q05BQ5 628 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 TFDP1Q14186 410 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 IER5LQ5T953 404 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 NOTUMQ6P988 496 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 SUGP1Q8IWZ8 645 aaKnown RBP19.05■□□□□ 0.64
CLN3-216ENST00000565316 TMEM87AQ8NBN3 555 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 PRSS33Q8NF86 280 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 ASAP3Q8TDY4 903 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 EIF2AQ9BY44 585 aaKnown RBP19.05■□□□□ 0.64
CLN3-216ENST00000565316 RNF39Q9H2S5 420 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 FAN1Q9Y2M0 1017 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 ARID2Q68CP9 1835 aa19.05■□□□□ 0.64
CLN3-216ENST00000565316 NRP1O14786 923 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 NEMFO60524 1076 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 EFEMP2O95967 443 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 POMCP01189 267 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 ITGA4P13612 1032 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 SP100P23497 879 aaPredicted RBP19.04■□□□□ 0.64
CLN3-216ENST00000565316 RARRES1P49788 294 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 NEK4P51957 841 aa19.04■□□□□ 0.64
CLN3-216ENST00000565316 CAPSQ13938 189 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms