RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 OR52Z1P0C646 297 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 XRCC6P12956 609 aaKnown RBP eCLIP12.04□□□□□ -0.48
VPS39-208ENST00000564994 ALDH7A1P49419 539 aaKnown RBP12.04□□□□□ -0.48
VPS39-208ENST00000564994 MBTD1Q05BQ5 628 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 POU5F1BQ06416 359 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 ORC2Q13416 577 aaPredicted RBP12.04□□□□□ -0.48
VPS39-208ENST00000564994 POTEGQ6S5H5 508 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 TMC7Q7Z402 723 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 ZNF280BQ86YH2 543 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 NOSTRINQ8IVI9 506 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 C4orf32Q8N8J7 132 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 SMG8Q8ND04 991 aaKnown RBP12.04□□□□□ -0.48
VPS39-208ENST00000564994 RSPH1Q8WYR4 309 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 PGBD4Q96DM1 585 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 CPB2Q96IY4 423 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 EIF2AQ9BY44 585 aaKnown RBP12.04□□□□□ -0.48
VPS39-208ENST00000564994 TUFT1Q9NNX1 390 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 NGRNQ9NPE2 291 aaKnown RBP12.04□□□□□ -0.48
VPS39-208ENST00000564994 GPRC5CQ9NQ84 441 aa12.04□□□□□ -0.48
VPS39-208ENST00000564994 C2orf71A6NGG8 1288 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 INO80B-WBP1J3KQ70 363 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 B4GALT5O43286 388 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 DDHD2O94830 711 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 ERLIN2O94905 339 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 CD2BP2O95400 341 aaKnown RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 NCLP19338 710 aaKnown RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 U2AF2P26368 475 aaKnown RBP eCLIP12.03□□□□□ -0.48
VPS39-208ENST00000564994 RPA1P27694 616 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 SLC11A1P49279 550 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 TOB1P50616 345 aaPredicted RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 TFDP1Q14186 410 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 RABEP1Q15276 862 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 ECM1Q16610 540 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 LLGL2Q6P1M3 1020 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 TMEM184AQ6ZMB5 413 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 MAEAQ7L5Y9 396 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 MRPL43Q8N983 215 aaKnown RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 TMEM169Q96HH4 297 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 IGSF21Q96ID5 467 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 CCDC43Q96MW1 224 aaKnown RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 POLR3CQ9BUI4 534 aaPredicted RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 VN1R3Q9BXE9 311 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 NFKBIZQ9BYH8 718 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 GBP3Q9H0R5 595 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 POLR3FQ9H1D9 316 aaPredicted RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 RNF39Q9H2S5 420 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 RSAD1Q9HA92 442 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 DBR1Q9UK59 544 aaKnown RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 USP15Q9Y4E8 981 aaPredicted RBP12.03□□□□□ -0.48
VPS39-208ENST00000564994 HES2Q9Y543 173 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 IPPQ9Y573 584 aa12.03□□□□□ -0.48
VPS39-208ENST00000564994 TECTAO75443 2155 aa12.02□□□□□ -0.48
VPS39-208ENST00000564994 GPR37L1O60883 481 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 POMCP01189 267 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 ARF4P18085 180 aaPredicted RBP12.02□□□□□ -0.49
VPS39-208ENST00000564994 AXLP30530 894 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 TRAPPC10P48553 1259 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 RNASELQ05823 741 aaKnown RBP12.02□□□□□ -0.49
VPS39-208ENST00000564994 GNL2Q13823 731 aaKnown RBP12.02□□□□□ -0.49
VPS39-208ENST00000564994 SMC1AQ14683 1233 aaKnown RBP12.02□□□□□ -0.49
VPS39-208ENST00000564994 PCBP1Q15365 356 aaKnown RBP eCLIP12.02□□□□□ -0.49
VPS39-208ENST00000564994 TMEM31Q5JXX7 168 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 ANKRD54Q6NXT1 300 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 NOTUMQ6P988 496 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 SYCE2Q6PIF2 218 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 CDR2LQ86X02 465 aaPredicted RBP12.02□□□□□ -0.49
VPS39-208ENST00000564994 VPS52Q8N1B4 723 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 AUTS2Q8WXX7 1259 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 SUSD6Q92537 303 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 NACC1Q96RE7 527 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 ZBP1Q9H171 429 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 S1PR5Q9H228 398 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 PCDHB6Q9Y5E3 794 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 HCFC2Q9Y5Z7 792 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 CNTNAP2Q9UHC6 1331 aa12.02□□□□□ -0.49
VPS39-208ENST00000564994 TRIP11Q15643 1979 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 FSD2A1L4K1 749 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 INPPL1O15357 1258 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 DCXO43602 365 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 CLASP2O75122 1294 aaKnown RBP12.01□□□□□ -0.49
VPS39-208ENST00000564994 CXCL14O95715 111 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 CTSAP10619 480 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 ITGA4P13612 1032 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 ALADP13716 330 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 FXR2P51116 673 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS39-208ENST00000564994 PTGDRQ13258 359 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 DDX53Q86TM3 631 aaKnown RBP12.01□□□□□ -0.49
VPS39-208ENST00000564994 RNF135Q8IUD6 432 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 CNNM3Q8NE01 707 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 URGCPQ8TCY9 931 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 BSNDQ8WZ55 320 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 CCDC51Q96ER9 411 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 TMX3Q96JJ7 454 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 GAD1Q99259 594 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 POP1Q99575 1024 aaKnown RBP12.01□□□□□ -0.49
VPS39-208ENST00000564994 APOL5Q9BWW9 433 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 CSRNP2Q9H175 543 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 NXF3Q9H4D5 531 aaKnown RBP12.01□□□□□ -0.49
VPS39-208ENST00000564994 MIOSQ9NXC5 875 aa12.01□□□□□ -0.49
VPS39-208ENST00000564994 CDH22Q9UJ99 828 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms