RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 ASGR2P07307 311 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 U2AF1L5P0DN76 240 aaPredicted RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 COL6A1P12109 1028 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 NFKB2Q00653 900 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 U2AF1Q01081 240 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS35-204ENST00000563884 GRB10Q13322 594 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 LRRC26Q2I0M4 334 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 UBXN11Q5T124 520 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 NT5DC1Q5TFE4 455 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 EEF1DP3Q658K8 133 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 RCSD1Q6JBY9 416 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 LIPIQ6XZB0 460 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 ADAT2Q7Z6V5 191 aaKnown RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 NLRP10Q86W26 655 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 MCF2L2Q86YR7 1114 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS35-204ENST00000563884 BORCS6Q96GS4 357 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 RNPC3Q96LT9 517 aaKnown RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 MCMBPQ9BTE3 642 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 COA1Q9GZY4 146 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 BCAS3Q9H6U6 928 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 KMT2BQ9UMN6 2715 aaPredicted RBP6.49□□□□□ -1.37
VPS35-204ENST00000563884 EPG5Q9HCE0 2579 aa6.49□□□□□ -1.37
VPS35-204ENST00000563884 STXBP3O00186 592 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 AURKAO14965 403 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 VAMP4O75379 141 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 GLI4P10075 376 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 ETFBP38117 255 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 KRTAP10-2P60368 255 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 ARID5AQ03989 594 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 PPATQ06203 517 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 RASA3Q14644 834 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 DPY19L1Q2PZI1 675 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 SPATS1Q496A3 300 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 TNNI3KQ59H18 835 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 TTLL5Q6EMB2 1281 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 LZTR1Q8N653 840 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 PNISRQ8TF01 805 aaKnown RBP6.48□□□□□ -1.37
VPS35-204ENST00000563884 TIFAQ96CG3 184 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 FGD4Q96M96 766 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 UIMC1Q96RL1 719 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 SIN3AQ96ST3 1273 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 CGGBP1Q9UFW8 167 aaPredicted RBP6.48□□□□□ -1.37
VPS35-204ENST00000563884 RWDD3Q9Y3V2 267 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 MRVI1Q9Y6F6 885 aa6.48□□□□□ -1.37
VPS35-204ENST00000563884 TRANK1O15050 2925 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 A0A1B0GUL6 1792 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.47□□□□□ -1.37
VPS35-204ENST00000563884 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.47□□□□□ -1.37
VPS35-204ENST00000563884 CLRN2A0PK11 232 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 PI4K2BG5E9Z4 385 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 SSBP05455 408 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS35-204ENST00000563884 PMLP29590 882 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 SEPHS1P49903 392 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 C9orf50Q5SZB4 431 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 GGNQ86UU5 652 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 APEX2Q9UBZ4 518 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 NUDT5Q9UKK9 219 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 EMC9Q9Y3B6 208 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 DOCK2Q92608 1830 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 MYBBP1AQ9BQG0 1328 aaKnown RBP6.47□□□□□ -1.37
VPS35-204ENST00000563884 WDFY4Q6ZS81 3184 aa6.47□□□□□ -1.37
VPS35-204ENST00000563884 CHD8Q9HCK8 2581 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 ALADP13716 330 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 DOCK1Q14185 1865 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 CFAP100Q494V2 611 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 ZFYVE27Q5T4F4 411 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 CCDC174Q6PII3 467 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 B3GNT8Q7Z7M8 397 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 FERMT3Q86UX7 667 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.46□□□□□ -1.38
VPS35-204ENST00000563884 SMCR8Q8TEV9 937 aaPredicted RBP6.46□□□□□ -1.38
VPS35-204ENST00000563884 USP33Q8TEY7 942 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 HERVK_113Q902F9 699 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 PEX11GQ96HA9 241 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 WRNIP1Q96S55 665 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 APBA2Q99767 749 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 PRRX2Q99811 253 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS35-204ENST00000563884 MXD3Q9BW11 206 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 ACTR10Q9NZ32 417 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 COG5Q9UP83 839 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 BACE2Q9Y5Z0 518 aa6.46□□□□□ -1.38
VPS35-204ENST00000563884 REV3LO60673 3130 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 LOC285556D6RIA3 1793 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 SH3D21A4FU49 640 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 C2orf71A6NGG8 1288 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 ERC2O15083 957 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 RBM5P52756 815 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS35-204ENST00000563884 AMPD2Q01433 879 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 EFEMP1Q12805 493 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 CCDC152Q4G0S7 254 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 CPNE8Q86YQ8 564 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 ANKRD18AQ8IVF6 992 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 BVESQ8NE79 360 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 TSPAN17Q96FV3 270 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 MRGPRX3Q96LB0 322 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 PRDM12Q9H4Q4 367 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 GULP1Q9UBP9 304 aa6.45□□□□□ -1.38
VPS35-204ENST00000563884 SLC45A1Q9Y2W3 748 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms